We study chiral magnetic effect in collisions of AuAu, RuRu and ZrZr at s = 200GeV. The axial charge evolution is modeled with stochastic hydrodynamics and geometrical quantities are calculated with Monte Carlo Glauber model. By adjusting the relaxation time of magnetic field, we find our results in good agreement with background subtracted data for AuAu collisions at the same energy. We also make prediction for RuRu and ZrZr collisions. We find a weak centrality dependence of initial chiral imbalance, which implies the centrality dependence of chiral magnetic effect signal comes mainly from those of magnetic field and volume factor. Our results also show an unexpected dependence on system size: while the system of AuAu has larger chiral imbalance and magnetic field, it turns out to have smaller signal for chiral magnetic effect due to the larger volume suppression factor.