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Variational autoencoder (VAE) is a widely used generative model for learning latent representations. Burda et al. in their seminal paper showed that learning capacity of VAE is limited by over-pruning. It is a phenomenon where a significant number of latent variables fail to capture any information about the input data and the corresponding hidden units become inactive. This adversely affects learning diverse and interpretable latent representations. As variational graph autoencoder (VGAE) extends VAE for graph-structured data, it inherits the over-pruning problem. In this paper, we adopt a model based approach and propose epitomic VGAE (EVGAE),a generative variational framework for graph datasets which successfully mitigates the over-pruning problem and also boosts the generative ability of VGAE. We consider EVGAE to consist of multiple sparse VGAE models, called epitomes, that are groups of latent variables sharing the latent space. This approach aids in increasing active units as epitomes compete to learn better representation of the graph data. We verify our claims via experiments on three benchmark datasets. Our experiments show that EVGAE has a better generative ability than VGAE. Moreover, EVGAE outperforms VGAE on link prediction task in citation networks.
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Generative models of graphs are well-known, but many existing models are limited in scalability and expressivity. We present a novel sequential graphical variational autoencoder operating directly on graphical representations of data. In our model, the encoding and decoding of a graph as is framed as a sequential deconstruction and construction process, respectively, enabling the the learning of a latent space. Experiments on a cycle dataset show promise, but highlight the need for a relaxation of the distribution over node permutations.
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Variation Autoencoder (VAE) has become a powerful tool in modeling the non-linear generative process of data from a low-dimensional latent space. Recently, several studies have proposed to use VAE for unsupervised clustering by using mixture models to capture the multi-modal structure of latent representations. This strategy, however, is ineffective when there are outlier data samples whose latent representations are meaningless, yet contaminating the estimation of key major clusters in the latent space. This exact problem arises in the context of resting-state fMRI (rs-fMRI) analysis, where clustering major functional connectivity patterns is often hindered by heavy noise of rs-fMRI and many minor clusters (rare connectivity patterns) of no interest to analysis. In this paper we propose a novel generative process, in which we use a Gaussian-mixture to model a few major clusters in the data, and use a non-informative uniform distribution to capture the remaining data. We embed this truncated Gaussian-Mixture model in a Variational AutoEncoder framework to obtain a general joint clustering and outlier detection approach, called tGM-VAE. We demonstrated the applicability of tGM-VAE on the MNIST dataset and further validated it in the context of rs-fMRI connectivity analysis.
In the field of machine learning, it is still a critical issue to identify and supervise the learned representation without manually intervening or intuition assistance to extract useful knowledge or serve for the downstream tasks. In this work, we focus on supervising the influential factors extracted by the variational autoencoder(VAE). The VAE is proposed to learn independent low dimension representation while facing the problem that sometimes pre-set factors are ignored. We argue that the mutual information of the input and each learned factor of the representation plays a necessary indicator of discovering the influential factors. We find the VAE objective inclines to induce mutual information sparsity in factor dimension over the data intrinsic dimension and results in some non-influential factors whose function on data reconstruction could be ignored. We show mutual information also influences the lower bound of VAEs reconstruction error and downstream classification task. To make such indicator applicable, we design an algorithm for calculating the mutual information for VAE and prove its consistency. Experimental results on MNIST, CelebA and DEAP datasets show that mutual information can help determine influential factors, of which some are interpretable and can be used to further generation and classification tasks, and help discover the variant that connects with emotion on DEAP dataset.
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