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Register a new userSemi-Supervised Cervical Dysplasia Classification With Learnable Graph Convolutional Network
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Added by
Yanglan Ou
Publication date
2020
fields
Informatics Engineering
and research's language is
English
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Cervical cancer is the second most prevalent cancer affecting women today. As the early detection of cervical carcinoma relies heavily upon screening and pre-clinical testing, digital cervicography has great potential as a primary or auxiliary screening tool, especially in low-resource regions due to its low cost and easy access. Although an automated cervical dysplasia detection system has been desirable, traditional fully-supervised training of such systems requires large amounts of annotated data which are often labor-intensive to collect. To alleviate the need for much manual annotation, we propose a novel graph convolutional network (GCN) based semi-supervised classification model that can be trained with fewer annotations. In existing GCNs, graphs are constructed with fixed features and can not be updated during the learning process. This limits their ability to exploit new features learned during graph convolution. In this paper, we propose a novel and more flexible GCN model with a feature encoder that adaptively updates the adjacency matrix during learning and demonstrate that this model design leads to improved performance. Our experimental results on a cervical dysplasia classification dataset show that the proposed framework outperforms previous methods under a semi-supervised setting, especially when the labeled samples are scarce.
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Data augmentation aims to generate new and synthetic features from the original data, which can identify a better representation of data and improve the performance and generalizability of downstream tasks. However, data augmentation for graph-based models remains a challenging problem, as graph data is more complex than traditional data, which consists of two features with different properties: graph topology and node attributes. In this paper, we study the problem of graph data augmentation for Graph Convolutional Network (GCN) in the context of improving the node embeddings for semi-supervised node classification. Specifically, we conduct cosine similarity based cross operation on the original features to create new graph features, including new node attributes and new graph topologies, and we combine them as new pairwise inputs for specific GCNs. Then, we propose an attentional integrating model to weighted sum the hidden node embeddings encoded by these GCNs into the final node embeddings. We also conduct a disparity constraint on these hidden node embeddings when training to ensure that non-redundant information is captured from different features. Experimental results on five real-world datasets show that our method improves the classification accuracy with a clear margin (+2.5% - +84.2%) than the original GCN model.
Graph convolutional neural network provides good solutions for node classification and other tasks with non-Euclidean data. There are several graph convolutional models that attempt to develop deep networks but do not cause serious over-smoothing at the same time. Considering that the wavelet transform generally has a stronger ability to extract useful information than the Fourier transform, we propose a new deep graph wavelet convolutional network (DeepGWC) for semi-supervised node classification tasks. Based on the optimized static filtering matrix parameters of vanilla graph wavelet neural networks and the combination of Fourier bases and wavelet ones, DeepGWC is constructed together with the reuse of residual connection and identity mappings in network architectures. Extensive experiments on three benchmark datasets including Cora, Citeseer, and Pubmed are conducted. The experimental results demonstrate that our DeepGWC outperforms existing graph deep models with the help of additional wavelet bases and achieves new state-of-the-art performances eventually.
Graph convolutional networks (GCNs) have achieved promising performance on various graph-based tasks. However they suffer from over-smoothing when stacking more layers. In this paper, we present a quantitative study on this observation and develop novel insights towards the deeper GCN. First, we interpret the current graph convolutional operations from an optimization perspective and argue that over-smoothing is mainly caused by the naive first-order approximation of the solution to the optimization problem. Subsequently, we introduce two metrics to measure the over-smoothing on node-level tasks. Specifically, we calculate the fraction of the pairwise distance between connected and disconnected nodes to the overall distance respectively. Based on our theoretical and empirical analysis, we establish a universal theoretical framework of GCN from an optimization perspective and derive a novel convolutional kernel named GCN+ which has lower parameter amount while relieving the over-smoothing inherently. Extensive experiments on real-world datasets demonstrate the superior performance of GCN+ over state-of-the-art baseline methods on the node classification tasks.
Ultrasound (US) is a non-invasive yet effective medical diagnostic imaging technique for the COVID-19 global pandemic. However, due to complex feature behaviors and expensive annotations of US images, it is difficult to apply Artificial Intelligence (AI) assisting approaches for lungs multi-symptom (multi-label) classification. To overcome these difficulties, we propose a novel semi-supervised Two-Stream Active Learning (TSAL) method to model complicated features and reduce labeling costs in an iterative procedure. The core component of TSAL is the multi-label learning mechanism, in which label correlations information is used to design multi-label margin (MLM) strategy and confidence validation for automatically selecting informative samples and confident labels. On this basis, a multi-symptom multi-label (MSML) classification network is proposed to learn discriminative features of lung symptoms, and a human-machine interaction is exploited to confirm the final annotations that are used to fine-tune MSML with progressively labeled data. Moreover, a novel lung US dataset named COVID19-LUSMS is built, currently containing 71 clinical patients with 6,836 images sampled from 678 videos. Experimental evaluations show that TSAL using only 20% data can achieve superior performance to the baseline and the state-of-the-art. Qualitatively, visualization of both attention map and sample distribution confirms the good consistency with the clinic knowledge.
Pooling is a simple but essential layer in modern deep CNN architectures for feature aggregation and extraction. Typical CNN design focuses on the conv layers and activation functions, while leaving the pooling layers with fewer options. We introduce the Learning Discrete Wavelet Pooling (LDW-Pooling) that can be applied universally to replace standard pooling operations to better extract features with improved accuracy and efficiency. Motivated from the wavelet theory, we adopt the low-pass (L) and high-pass (H) filters horizontally and vertically for pooling on a 2D feature map. Feature signals are decomposed into four (LL, LH, HL, HH) subbands to retain features better and avoid information dropping. The wavelet transform ensures features after pooling can be fully preserved and recovered. We next adopt an energy-based attention learning to fine-select crucial and representative features. LDW-Pooling is effective and efficient when compared with other state-of-the-art pooling techniques such as WaveletPooling and LiftPooling. Extensive experimental validation shows that LDW-Pooling can be applied to a wide range of standard CNN architectures and consistently outperform standard (max, mean, mixed, and stochastic) pooling operations.
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