No Arabic abstract
Intraoperative tracking of laparoscopic instruments is often a prerequisite for computer and robotic-assisted interventions. While numerous methods for detecting, segmenting and tracking of medical instruments based on endoscopic video images have been proposed in the literature, key limitations remain to be addressed: Firstly, robustness, that is, the reliable performance of state-of-the-art methods when run on challenging images (e.g. in the presence of blood, smoke or motion artifacts). Secondly, generalization; algorithms trained for a specific intervention in a specific hospital should generalize to other interventions or institutions. In an effort to promote solutions for these limitations, we organized the Robust Medical Instrument Segmentation (ROBUST-MIS) challenge as an international benchmarking competition with a specific focus on the robustness and generalization capabilities of algorithms. For the first time in the field of endoscopic image processing, our challenge included a task on binary segmentation and also addressed multi-instance detection and segmentation. The challenge was based on a surgical data set comprising 10,040 annotated images acquired from a total of 30 surgical procedures from three different types of surgery. The validation of the competing methods for the three tasks (binary segmentation, multi-instance detection and multi-instance segmentation) was performed in three different stages with an increasing domain gap between the training and the test data. The results confirm the initial hypothesis, namely that algorithm performance degrades with an increasing domain gap. While the average detection and segmentation quality of the best-performing algorithms is high, future research should concentrate on detection and segmentation of small, crossing, moving and transparent instrument(s) (parts).
In mainstream computer vision and machine learning, public datasets such as ImageNet, COCO and KITTI have helped drive enormous improvements by enabling researchers to understand the strengths and limitations of different algorithms via performance comparison. However, this type of approach has had limited translation to problems in robotic assisted surgery as this field has never established the same level of common datasets and benchmarking methods. In 2015 a sub-challenge was introduced at the EndoVis workshop where a set of robotic images were provided with automatically generated annotations from robot forward kinematics. However, there were issues with this dataset due to the limited background variation, lack of complex motion and inaccuracies in the annotation. In this work we present the results of the 2017 challenge on robotic instrument segmentation which involved 10 teams participating in binary, parts and type based segmentation of articulated da Vinci robotic instruments.
In this work we predict vehicle speed and steering angle given camera image frames. Our key contribution is using an external pre-trained neural network for segmentation. We augment the raw images with their segmentation masks and mirror images. We ensemble three diverse neural network models (i) a CNN using a single image and its segmentation mask, (ii) a stacked CNN taking as input a sequence of images and segmentation masks, and (iii) a bidirectional GRU, extracting image features using a pre-trained ResNet34, DenseNet121 and our own CNN single image model. We achieve the second best performance for MSE angle and second best performance overall, to win 2nd place in the ICCV Learning to Drive challenge. We make our models and code publicly available.
To mitigate the radiologists workload, computer-aided diagnosis with the capability to review and analyze medical images is gradually deployed. Deep learning-based region of interest segmentation is among the most exciting use cases. However, this paradigm is restricted in real-world clinical applications due to poor robustness and generalization. The issue is more sinister with a lack of training data. In this paper, we address the challenge from the representation learning point of view. We investigate that the collapsed representations, as one of the main reasons which caused poor robustness and generalization, could be avoided through transfer learning. Therefore, we propose a novel two-stage framework for robust generalized segmentation. In particular, an unsupervised Tile-wise AutoEncoder (T-AE) pretraining architecture is coined to learn meaningful representation for improving the generalization and robustness of the downstream tasks. Furthermore, the learned knowledge is transferred to the segmentation benchmark. Coupled with an image reconstruction network, the representation keeps to be decoded, encouraging the model to capture more semantic features. Experiments of lung segmentation on multi chest X-ray datasets are conducted. Empirically, the related experimental results demonstrate the superior generalization capability of the proposed framework on unseen domains in terms of high performance and robustness to corruption, especially under the scenario of the limited training data.
Medical instrument segmentation in 3D ultrasound is essential for image-guided intervention. However, to train a successful deep neural network for instrument segmentation, a large number of labeled images are required, which is expensive and time-consuming to obtain. In this article, we propose a semi-supervised learning (SSL) framework for instrument segmentation in 3D US, which requires much less annotation effort than the existing methods. To achieve the SSL learning, a Dual-UNet is proposed to segment the instrument. The Dual-UNet leverages unlabeled data using a novel hybrid loss function, consisting of uncertainty and contextual constraints. Specifically, the uncertainty constraints leverage the uncertainty estimation of the predictions of the UNet, and therefore improve the unlabeled information for SSL training. In addition, contextual constraints exploit the contextual information of the training images, which are used as the complementary information for voxel-wise uncertainty estimation. Extensive experiments on multiple ex-vivo and in-vivo datasets show that our proposed method achieves Dice score of about 68.6%-69.1% and the inference time of about 1 sec. per volume. These results are better than the state-of-the-art SSL methods and the inference time is comparable to the supervised approaches.
In this technical report, we present key details of our winning panoptic segmentation architecture EffPS_b1bs4_RVC. Our network is a lightweight version of our state-of-the-art EfficientPS architecture that consists of our proposed shared backbone with a modified EfficientNet-B5 model as the encoder, followed by the 2-way FPN to learn semantically rich multi-scale features. It consists of two task-specific heads, a modified Mask R-CNN instance head and our novel semantic segmentation head that processes features of different scales with specialized modules for coherent feature refinement. Finally, our proposed panoptic fusion module adaptively fuses logits from each of the heads to yield the panoptic segmentation output. The Robust Vision Challenge 2020 benchmarking results show that our model is ranked #1 on Microsoft COCO, VIPER and WildDash, and is ranked #2 on Cityscapes and Mapillary Vistas, thereby achieving the overall rank #1 for the panoptic segmentation task.