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Register a new userDeep Phase Decoder: Self-calibrating phase microscopy with an untrained deep neural network
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Deep neural networks have emerged as effective tools for computational imaging including quantitative phase microscopy of transparent samples. To reconstruct phase from intensity, current approaches rely on supervised learning with training examples; consequently, their performance is sensitive to a match of training and imaging settings. Here we propose a new approach to phase microscopy by using an untrained deep neural network for measurement formation, encapsulating the image prior and imaging physics. Our approach does not require any training data and simultaneously reconstructs the sought phase and pupil-plane aberrations by fitting the weights of the network to the captured images. To demonstrate experimentally, we reconstruct quantitative phase from through-focus images blindly (i.e. no explicit knowledge of the aberrations).
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This paper proposes a deep learning-based channel estimation method for multi-cell interference-limited massive MIMO systems, in which base stations equipped with a large number of antennas serve multiple single-antenna users. The proposed estimator employs a specially designed deep neural network (DNN) to first denoise the received signal, followed by a conventional least-squares (LS) estimation. We analytically prove that our LS-type deep channel estimator can approach minimum mean square error (MMSE) estimator performance for high-dimensional signals, while avoiding MMSEs requirement for complex channel
Quantitative phase imaging (QPI) has been widely applied in characterizing cells and tissues. Spatial light interference microscopy (SLIM) is a highly sensitive QPI method, due to its partially coherent illumination and common path interferometry geometry. However, its acquisition rate is limited because of the four-frame phase-shifting scheme. On the other hand, off-axis methods like diffraction phase microscopy (DPM), allows for single-shot QPI. However, the laser-based DPM system is plagued by spatial noise due to speckles and multiple reflections. In a parallel development, deep learning was proven valuable in the field of bioimaging, especially due to its ability to translate one form of contrast into another. Here, we propose using deep learning to produce synthetic, SLIM-quality, high-sensitivity phase maps from DPM, single-shot images as input. We used an inverted microscope with its two ports connected to the DPM and SLIM modules, such that we have access to the two types of images on the same field of view. We constructed a deep learning model based on U-net and trained on over 1,000 pairs of DPM and SLIM images. The model learned to remove the speckles in laser DPM and overcame the background phase noise in both the test set and new data. Furthermore, we implemented the neural network inference into the live acquisition software, which now allows a DPM user to observe in real-time an extremely low-noise phase image. We demonstrated this principle of computational interference microscopy (CIM) imaging using blood smears, as they contain both erythrocytes and leukocytes, in static and dynamic conditions.
Phase retrieval approaches based on DL provide a framework to obtain phase information from an intensity hologram or diffraction pattern in a robust manner and in real time. However, current DL architectures applied to the phase problem rely i) on paired datasets, i.e., they are only applicable when a satisfactory solution of the phase problem has been found, and ii) on the fact that most of them ignore the physics of the imaging process. Here, we present PhaseGAN, a new DL approach based on Generative Adversarial Networks, which allows the use of unpaired datasets and includes the physics of image formation. Performance of our approach is enhanced by including the image formation physics and provides phase reconstructions when conventional phase retrieval algorithms fail, such as ultra-fast experiments. Thus, PhaseGAN offers the opportunity to address the phase problem when no phase reconstructions are available, but good simulations of the object or data from other experiments are available, enabling us to obtain results not possible before.
Unitary learning is a backpropagation that serves to unitary weights update in deep complex-valued neural network with full connections, meeting a physical unitary prior in diffractive deep neural network ([DN]2). However, the square matrix property of unitary weights induces that the function signal has a limited dimension that could not generalize well. To address the overfitting problem that comes from the small samples loaded to [DN]2, an optical phase dropout trick is implemented. Phase dropout in unitary space that is evolved from a complex dropout and has a statistical inference is formulated for the first time. A synthetic mask recreated from random point apertures with random phase-shifting and its smothered modulation tailors the redundant links through incompletely sampling the input optical field at each diffractive layer. The physical features about the synthetic mask using different nonlinear activations are elucidated in detail. The equivalence between digital and diffractive model determines compound modulations that could successfully circumvent the nonlinear activations physically implemented in [DN]2. The numerical experiments verify the superiority of optical phase dropout in [DN]2 to enhance accuracy in 2D classification and recognition tasks-oriented.
Video microscopy has a long history of providing insights and breakthroughs for a broad range of disciplines, from physics to biology. Image analysis to extract quantitative information from video microscopy data has traditionally relied on algorithmic approaches, which are often difficult to implement, time consuming, and computationally expensive. Recently, alternative data-driven approaches using deep learning have greatly improved quantitative digital microscopy, potentially offering automatized, accurate, and fast image analysis. However, the combination of deep learning and video microscopy remains underutilized primarily due to the steep learning curve involved in developing custom deep-learning solutions. To overcome this issue, we introduce a software, DeepTrack 2.0, to design, train and validate deep-learning solutions for digital microscopy. We use it to exemplify how deep learning can be employed for a broad range of applications, from particle localization, tracking and characterization to cell counting and classification. Thanks to its user-friendly graphical interface, DeepTrack 2.0 can be easily customized for user-specific applications, and, thanks to its open-source object-oriented programming, it can be easily expanded to add features and functionalities, potentially introducing deep-learning-enhanced video microscopy to a far wider audience.
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