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Register a new userA Systematic Comparison of Bayesian Deep Learning Robustness in Diabetic Retinopathy Tasks
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Evaluation of Bayesian deep learning (BDL) methods is challenging. We often seek to evaluate the methods robustness and scalability, assessing whether new tools give `better uncertainty estimates than old ones. These evaluations are paramount for practitioners when choosing BDL tools on-top of which they build their applications. Current popular evaluations of BDL methods, such as the UCI experiments, are lacking: Methods that excel with these experiments often fail when used in application such as medical or automotive, suggesting a pertinent need for new benchmarks in the field. We propose a new BDL benchmark with a diverse set of tasks, inspired by a real-world medical imaging application on emph{diabetic retinopathy diagnosis}. Visual inputs (512x512 RGB images of retinas) are considered, where model uncertainty is used for medical pre-screening---i.e. to refer patients to an expert when model diagnosis is uncertain. Methods are then ranked according to metrics derived from expert-domain to reflect real-world use of model uncertainty in automated diagnosis. We develop multiple tasks that fall under this application, including out-of-distribution detection and robustness to distribution shift. We then perform a systematic comparison of well-tuned BDL techniques on the various tasks. From our comparison we conclude that some current techniques which solve benchmarks such as UCI `overfit their uncertainty to the dataset---when evaluated on our benchmark these underperform in comparison to simpler baselines. The code for the benchmark, its baselines, and a simple API for evaluating new BDL tools are made available at https://github.com/oatml/bdl-benchmarks.
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Diabetic retinopathy (DR) is a common retinal disease that leads to blindness. For diagnosis purposes, DR image grading aims to provide automatic DR grade classification, which is not addressed in conventional research methods of binary DR image classification. Small objects in the eye images, like lesions and microaneurysms, are essential to DR grading in medical imaging, but they could easily be influenced by other objects. To address these challenges, we propose a new deep learning architecture, called BiRA-Net, which combines the attention model for feature extraction and bilinear model for fine-grained classification. Furthermore, in considering the distance between different grades of different DR categories, we propose a new loss function, called grading loss, which leads to improved training convergence of the proposed approach. Experimental results are provided to demonstrate the superior performance of the proposed approach.
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While the choice of prior is one of the most critical parts of the Bayesian inference workflow, recent Bayesian deep learning models have often fallen back on vague priors, such as standard Gaussians. In this review, we highlight the importance of prior choices for Bayesian deep learning and present an overview of different priors that have been proposed for (deep) Gaussian processes, variational autoencoders, and Bayesian neural networks. We also outline different methods of learning priors for these models from data. We hope to motivate practitioners in Bayesian deep learning to think more carefully about the prior specification for their models and to provide them with some inspiration in this regard.
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Postprocessing ensemble weather predictions to correct systematic errors has become a standard practice in research and operations. However, only few recent studies have focused on ensemble postprocessing of wind gust forecasts, despite its importance for severe weather warnings. Here, we provide a comprehensive review and systematic comparison of eight statistical and machine learning methods for probabilistic wind gust forecasting via ensemble postprocessing, that can be divided in three groups: State of the art postprocessing techniques from statistics (ensemble model output statistics (EMOS), member-by-member postprocessing, isotonic distributional regression), established machine learning methods (gradient-boosting extended EMOS, quantile regression forests) and neural network-based approaches (distributional regression network, Bernstein quantile network, histogram estimation network). The methods are systematically compared using six years of data from a high-resolution, convection-permitting ensemble prediction system that was run operationally at the German weather service, and hourly observations at 175 surface weather stations in Germany. While all postprocessing methods yield calibrated forecasts and are able to correct the systematic errors of the raw ensemble predictions, incorporating information from additional meteorological predictor variables beyond wind gusts leads to significant improvements in forecast skill. In particular, we propose a flexible framework of locally adaptive neural networks with different probabilistic forecast types as output, which not only significantly outperform all benchmark postprocessing methods but also learn physically consistent relations associated with the diurnal cycle, especially the evening transition of the planetary boundary layer.
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