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Register a new userLyaCoLoRe: Synthetic Datasets for Current and Future Lyman-${alpha}$ Forest BAO Surveys
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The statistical power of Lyman-${alpha}$ forest Baryon Acoustic Oscillation (BAO) measurements is set to increase significantly in the coming years as new instruments such as the Dark Energy Spectroscopic Instrument deliver progressively more constraining data. Generating mock datasets for such measurements will be important for validating analysis pipelines and evaluating the effects of systematics. With such studies in mind, we present LyaCoLoRe: a package for producing synthetic Lyman-${alpha}$ forest survey datasets for BAO analyses. LyaCoLoRe transforms initial Gaussian random field skewers into skewers of transmitted flux fraction via a number of fast approximations. In this work we explain the methods of producing mock datasets used in LyaCoLoRe, and then measure correlation functions on a suite of realisations of such data. We demonstrate that we are able to recover the correct BAO signal, as well as large-scale bias parameters similar to literature values. Finally, we briefly describe methods to add further astrophysical effects to our skewers - high column density systems and metal absorbers - which act as potential complications for BAO analyses.
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We propose a new method for fitting the full-shape of the Lyman-$alpha$ (Ly$alpha$) forest three-dimensional (3D) correlation function in order to measure the Alcock-Paczynski (AP) effect. Our method preserves the robustness of baryon acoustic oscillations (BAO) analyses, while also providing extra cosmological information from a broader range of scales. We compute idealized forecasts for the Dark Energy Spectroscopic Instrument (DESI) using the Ly$alpha$ auto-correlation and its cross-correlation with quasars, and show how this type of analysis improves cosmological constraints. The DESI Ly$alpha$ BAO analysis is expected to measure $H(z_mathrm{eff})r_mathrm{d}$ and $D_mathrm{M}(z_mathrm{eff})/r_mathrm{d}$ with a precision of $sim0.9%$ each, where $H$ is the Hubble parameter, $r_mathrm{d}$ is the comoving BAO scale, $D_mathrm{M}$ is the comoving angular diameter distance and the effective redshift of the measurement is $z_mathrm{eff}simeq2.3$. By fitting the AP parameter from the full shape of the two correlations, we show that we can obtain a precision of $sim0.5-0.6%$ on each of $H(z_mathrm{eff})r_mathrm{d}$ and $D_mathrm{M}(z_mathrm{eff})/r_mathrm{d}$. Furthermore, we show that a joint full-shape analysis of the Ly$alpha$ auto-correlation and its cross-correlation with quasars can measure the linear growth rate times the amplitude of matter fluctuations in spheres of $8;h^{-1}$Mpc, $fsigma_8(z_mathrm{eff})$. Such an analysis could provide the first ever measurement of $fsigma_8(z_mathrm{eff})$ at redshift $z_mathrm{eff}>2$. By combining this with the quasar auto-correlation in a joint analysis of the three high-redshift two-point correlation functions, we show that DESI could be able to measure $fsigma_8(z_mathrm{eff}simeq2.3)$ with a precision of $5-12%$, depending on the smallest scale fitted.
We investigate the large-scale structure of Lyman-alpha emission intensity in the Universe at redshifts z=2-3.5 using cross-correlation techniques. Our Lya emission samples are spectra of BOSS Luminous Red Galaxies from Data Release 12 with the best fit model galaxies subtracted. We cross-correlate the residual flux in these spectra with BOSS quasars, and detect a positive signal on scales 1-15 Mpc/h. We identify and remove a source of contamination not previously accounted for, due to the effects of quasar clustering on cross-fibre light. Corrected, our quasar-Lya emission cross-correlation is 50 % lower than that seen by Croft et al. for DR10, but still significant. Because only 3% of space is within 15 Mpc/h of a quasar, the result does not fully explore the global large-scale structure of Lya emission. To do this, we cross-correlate with the Lya forest. We find no signal in this case. The 95% upper limit on the global Lya mean surface brightness from Lya emission-Lya forest cross-correlation is mu < 1.2x10^-22 erg/s/cm^2/A/arcsec^2 This null result rules out the scenario where the observed quasar-Lya emission cross-correlation is primarily due to the large scale structure of star forming galaxies, Taken in combination, our results suggest that Lya emitting galaxies contribute, but quasars dominate within 15 Mpc/h. A simple model for Lya emission from quasars based on hydrodynamic simulations reproduces both the observed forest-Lya emission and quasar-Lya emission signals. The latter is also consistent with extrapolation of observations of fluorescent emission from smaller scales r < 1 Mpc.
We explore the use of Deep Learning to infer physical quantities from the observable transmitted flux in the Lyman-alpha forest. We train a Neural Network using redshift z=3 outputs from cosmological hydrodynamic simulations and mock datasets constructed from them. We evaluate how well the trained network is able to reconstruct the optical depth for Lyman-alpha forest absorption from noisy and often saturated transmitted flux data. The Neural Network outperforms an alternative reconstruction method involving log inversion and spline interpolation by approximately a factor of 2 in the optical depth root mean square error. We find no significant dependence in the improvement on input data signal to noise, although the gain is greatest in high optical depth regions. The Lyman-alpha forest optical depth studied here serves as a simple, one dimensional, example but the use of Deep Learning and simulations to approach the inverse problem in cosmology could be extended to other physical quantities and higher dimensional data.
The angular positions of quasars are deflected by the gravitational lensing effect of foreground matter. The Lyman-alpha forest seen in the spectra of these quasars is therefore also lensed. We propose that the signature of weak gravitational lensing of the forest could be measured using similar techniques that have been applied to the lensed Cosmic Microwave Background, and which have also been proposed for application to spectral data from 21cm radio telescopes. As with 21cm data, the forest has the advantage of spectral information, potentially yielding many lensed slices at different redshifts. We perform an illustrative idealized test, generating a high resolution angular grid of quasars (of order arcminute separation), and lensing the Lyman-alphaforest spectra at redshifts z=2-3 using a foreground density field. We find that standard quadratic estimators can be used to reconstruct images of the foreground mass distribution at z~1. There currently exists a wealth of Lya forest data from quasar and galaxy spectral surveys, with smaller sightline separations expected in the future. Lyman-alpha forest lensing is sensitive to the foreground mass distribution at redshifts intermediate between CMB lensing and galaxy shear, and avoids the difficulties of shape measurement associated with the latter. With further refinement and application of mass reconstruction techniques, weak gravitational lensing of the high redshift Lya forest may become a useful new cosmological probe.
Using a suite of hydrodynamical simulations with cold dark matter, baryons, and neutrinos, we present a detailed study of the effect of massive neutrinos on the 1-D and 3-D flux power spectra of the Lyman-$alpha$ (Ly$alpha$) forest. The presence of massive neutrinos in cosmology induces a scale- and time-dependent suppression of structure formation that is strongest on small scales. Measuring this suppression is a key method for inferring neutrino masses from cosmological data, and is one of the main goals of ongoing and future surveys like eBOSS, DES, LSST, Euclid or DESI. The clustering in the Ly$alpha$ forest traces the quasi-linear power at late times and on small scales. In combination with observations of the cosmic microwave background, the forest therefore provides some of the tightest constraints on the sum of the neutrino masses. However there is a well-known degeneracy between $Sigma m_{ u}$ and the amplitude of perturbations in the linear matter power spectrum. We study the corresponding degeneracy in the 1-D flux power spectrum of the Ly$alpha$ forest, and for the first time also study this degeneracy in the 3-D flux power spectrum. We show that the non-linear effects of massive neutrinos on the Ly$alpha$ forest, beyond the effect of linear power amplitude suppression, are negligible, and this degeneracy persists in the Ly$alpha$ forest observables to a high precision. We discuss the implications of this degeneracy for choosing parametrisations of the Ly$alpha$ forest for cosmological analysis.
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