No Arabic abstract
Making sense of words often requires to simultaneously examine the surrounding context of a term as well as the global themes characterizing the overall corpus. Several topic models have already exploited word embeddings to recognize local context, however, it has been weakly combined with the global context during the topic inference. This paper proposes to extract topical phrases corroborating the word embedding information with the global context detected by Latent Semantic Analysis, and then combine them by means of the P{o}lya urn model. To highlight the effectiveness of this combined approach the model was assessed analyzing clinical reports, a challenging scenario characterized by technical jargon and a limited word statistics available. Results show it outperforms the state-of-the-art approaches in terms of both topic coherence and computational cost.
Embedding based methods are widely used for unsupervised keyphrase extraction (UKE) tasks. Generally, these methods simply calculate similarities between phrase embeddings and document embedding, which is insufficient to capture different context for a more effective UKE model. In this paper, we propose a novel method for UKE, where local and global contexts are jointly modeled. From a global view, we calculate the similarity between a certain phrase and the whole document in the vector space as transitional embedding based models do. In terms of the local view, we first build a graph structure based on the document where phrases are regarded as vertices and the edges are similarities between vertices. Then, we proposed a new centrality computation method to capture local salient information based on the graph structure. Finally, we further combine the modeling of global and local context for ranking. We evaluate our models on three public benchmarks (Inspec, DUC 2001, SemEval 2010) and compare with existing state-of-the-art models. The results show that our model outperforms most models while generalizing better on input documents with different domains and length. Additional ablation study shows that both the local and global information is crucial for unsupervised keyphrase extraction tasks.
While most topic modeling algorithms model text corpora with unigrams, human interpretation often relies on inherent grouping of terms into phrases. As such, we consider the problem of discovering topical phrases of mixed lengths. Existing work either performs post processing to the inference results of unigram-based topic models, or utilizes complex n-gram-discovery topic models. These methods generally produce low-quality topical phrases or suffer from poor scalability on even moderately-sized datasets. We propose a different approach that is both computationally efficient and effective. Our solution combines a novel phrase mining framework to segment a document into single and multi-word phrases, and a new topic model that operates on the induced document partition. Our approach discovers high quality topical phrases with negligible extra cost to the bag-of-words topic model in a variety of datasets including research publication titles, abstracts, reviews, and news articles.
Extracting structured clinical information from free-text radiology reports can enable the use of radiology report information for a variety of critical healthcare applications. In our work, we present RadGraph, a dataset of entities and relations in full-text chest X-ray radiology reports based on a novel information extraction schema we designed to structure radiology reports. We release a development dataset, which contains board-certified radiologist annotations for 500 radiology reports from the MIMIC-CXR dataset (14,579 entities and 10,889 relations), and a test dataset, which contains two independent sets of board-certified radiologist annotations for 100 radiology reports split equally across the MIMIC-CXR and CheXpert datasets. Using these datasets, we train and test a deep learning model, RadGraph Benchmark, that achieves a micro F1 of 0.82 and 0.73 on relation extraction on the MIMIC-CXR and CheXpert test sets respectively. Additionally, we release an inference dataset, which contains annotations automatically generated by RadGraph Benchmark across 220,763 MIMIC-CXR reports (around 6 million entities and 4 million relations) and 500 CheXpert reports (13,783 entities and 9,908 relations) with mappings to associated chest radiographs. Our freely available dataset can facilitate a wide range of research in medical natural language processing, as well as computer vision and multi-modal learning when linked to chest radiographs.
There has been a steady need in the medical community to precisely extract the temporal relations between clinical events. In particular, temporal information can facilitate a variety of downstream applications such as case report retrieval and medical question answering. Existing methods either require expensive feature engineering or are incapable of modeling the global relational dependencies among the events. In this paper, we propose a novel method, Clinical Temporal ReLation Exaction with Probabilistic Soft Logic Regularization and Global Inference (CTRL-PG) to tackle the problem at the document level. Extensive experiments on two benchmark datasets, I2B2-2012 and TB-Dense, demonstrate that CTRL-PG significantly outperforms baseline methods for temporal relation extraction.
Identifying and understanding quality phrases from context is a fundamental task in text mining. The most challenging part of this task arguably lies in uncommon, emerging, and domain-specific phrases. The infrequent nature of these phrases significantly hurts the performance of phrase mining methods that rely on sufficient phrase occurrences in the input corpus. Context-aware tagging models, though not restricted by frequency, heavily rely on domain experts for either massive sentence-level gold labels or handcrafted gazetteers. In this work, we propose UCPhrase, a novel unsupervised context-aware quality phrase tagger. Specifically, we induce high-quality phrase spans as silver labels from consistently co-occurring word sequences within each document. Compared with typical context-agnostic distant supervision based on existing knowledge bases (KBs), our silver labels root deeply in the input domain and context, thus having unique advantages in preserving contextual completeness and capturing emerging, out-of-KB phrases. Training a conventional neural tagger based on silver labels usually faces the risk of overfitting phrase surface names. Alternatively, we observe that the contextualized attention maps generated from a transformer-based neural language model effectively reveal the connections between words in a surface-agnostic way. Therefore, we pair such attention maps with the silver labels to train a lightweight span prediction model, which can be applied to new input to recognize (unseen) quality phrases regardless of their surface names or frequency. Thorough experiments on various tasks and datasets, including corpus-level phrase ranking, document-level keyphrase extraction, and sentence-level phrase tagging, demonstrate the superiority of our design over state-of-the-art pre-trained, unsupervised, and distantly supervised methods.