The atmospheric neutrino flux represents a continuous source that can be exploited to infer properties about Cosmic Rays and neutrino oscillation physics. The JUNO observatory, a 20 kt liquid scintillator currently under construction in China, will be able to detect atmospheric neutrinos , given the large fiducial volume and the excellent energy resolution. The light produced in neutrino interactions will be collected by a double-system of photosensors: about 18.000 20 PMTs and about 25.000 3 PMTs. The rock overburden above the experimental hall is around 700 m and the experiment is expected to complete construction in 2021. In this study, the JUNO performances in reconstructing the atmospheric neutrino spectrum have been evaluated. The different time evolution of scintillation light on the PMTs allows to discriminate the flavor of the primary neutrinos. To reconstruct the time pattern of events, the signals from 3 PMTs only have been used, because of the small time resolution. A probabilistic unfolding method has been used, in order to infer the primary neutrino energy spectrum by looking at the detector output. The simulated spectrum has been reconstructed between 100 MeV and 10 GeV, showing a great potential of the detector in the atmospheric low energy region. The uncertainties on the final flux, including both statistic and the systematic contributions, range between 10% and 25%, with the best performances obtained at the GeV.
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