The Cyclotron Radiation Emission Spectroscopy (CRES) technique pioneered by Project 8 measures electromagnetic radiation from individual electrons gyrating in a background magnetic field to construct a highly precise energy spectrum for beta decay studies and other applications. The detector, magnetic trap geometry, and electron dynamics give rise to a multitude of complex electron signal structures which carry information about distinguishing physical traits. With machine learning models, we develop a scheme based on these traits to analyze and classify CRES signals. Understanding and proper use of these traits will be instrumental to improve cyclotron frequency reconstruction and help Project 8 achieve world-leading sensitivity on the tritium endpoint measurement in the future.