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Register a new userIterative Spectral Method for Alternative Clustering
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Given a dataset and an existing clustering as input, alternative clustering aims to find an alternative partition. One of the state-of-the-art approaches is Kernel Dimension Alternative Clustering (KDAC). We propose a novel Iterative Spectral Method (ISM) that greatly improves the scalability of KDAC. Our algorithm is intuitive, relies on easily implementable spectral decompositions, and comes with theoretical guarantees. Its computation time improves upon existing implementations of KDAC by as much as 5 orders of magnitude.
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For community detection problem, spectral clustering is a widely used method for detecting clusters in networks. In this paper, we propose an improved spectral clustering (ISC) approach under the degree corrected stochastic block model (DCSBM). ISC is designed based on the k-means clustering algorithm on the weighted leading K + 1 eigenvectors of a regularized Laplacian matrix where the weights are their corresponding eigenvalues. Theoretical analysis of ISC shows that under mild conditions the ISC yields stable consistent community detection. Numerical results show that ISC outperforms classical spectral clustering methods for community detection on both simulated and eight empirical networks. Especially, ISC provides a significant improvement on two weak signal networks Simmons and Caltech, with error rates of 121/1137 and 96/590, respectively.
Given a large data matrix, sparsifying, quantizing, and/or performing other entry-wise nonlinear operations can have numerous benefits, ranging from speeding up iterative algorithms for core numerical linear algebra problems to providing nonlinear filters to design state-of-the-art neural network models. Here, we exploit tools from random matrix theory to make precise statements about how the eigenspectrum of a matrix changes under such nonlinear transformations. In particular, we show that very little change occurs in the informative eigenstructure even under drastic sparsification/quantization, and consequently that very little downstream performance loss occurs with very aggressively sparsified or quantized spectral clustering. We illustrate how these results depend on the nonlinearity, we characterize a phase transition beyond which spectral clustering becomes possible, and we show when such nonlinear transformations can introduce spurious non-informative eigenvectors.
This paper presents a novel time series clustering method, the self-organising eigenspace map (SOEM), based on a generalisation of the well-known self-organising feature map (SOFM). The SOEM operates on the eigenspaces of the embedded covariance structures of time series which are related directly to modes in those time series. Approximate joint diagonalisation acts as a pseudo-metric across these spaces allowing us to generalise the SOFM to a neural network with matrix input. The technique is empirically validated against three sets of experiments; univariate and multivariate time series clustering, and application to (clustered) multi-variate time series forecasting. Results indicate that the technique performs a valid topologically ordered clustering of the time series. The clustering is superior in comparison to standard benchmarks when the data is non-aligned, gives the best clustering stage for when used in forecasting, and can be used with partial/non-overlapping time series, multivariate clustering and produces a topological representation of the time series objects.
Spectral clustering is one of the fundamental unsupervised learning methods widely used in data analysis. Sparse spectral clustering (SSC) imposes sparsity to the spectral clustering and it improves the interpretability of the model. This paper considers a widely adopted model for SSC, which can be formulated as an optimization problem over the Stiefel manifold with nonsmooth and nonconvex objective. Such an optimization problem is very challenging to solve. Existing methods usually solve its convex relaxation or need to smooth its nonsmooth part using certain smoothing techniques. In this paper, we propose a manifold proximal linear method (ManPL) that solves the original SSC formulation. We also extend the algorithm to solve the multiple-kernel SSC problems, for which an alternating ManPL algorithm is proposed. Convergence and iteration complexity results of the proposed methods are established. We demonstrate the advantage of our proposed methods over existing methods via the single-cell RNA sequencing data analysis.
Spectral dimensionality reduction methods enable linear separations of complex data with high-dimensional features in a reduced space. However, these methods do not always give the desired results due to irregularities or uncertainties of the data. Thus, we consider aggressively modifying the scales of the features to obtain the desired classification. Using prior knowledge on the labels of partial samples to specify the Fiedler vector, we formulate an eigenvalue problem of a linear matrix pencil whose eigenvector has the feature scaling factors. The resulting factors can modify the features of entire samples to form clusters in the reduced space, according to the known labels. In this study, we propose new dimensionality reduction methods supervised using the feature scaling associated with the spectral clustering. Numerical experiments show that the proposed methods outperform well-established supervised methods for toy problems with more samples than features, and are more robust regarding clustering than existing methods. Also, the proposed methods outperform existing methods regarding classification for real-world problems with more features than samples of gene expression profiles of cancer diseases. Furthermore, the feature scaling tends to improve the clustering and classification accuracies of existing unsupervised methods, as the proportion of training data increases.
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