In the color string picture with fusion and percolation the elliptic and triangular flows are studied for p-Au and d-Au collisions at 200 GeV. The ordering $v_n(d-Au)>v_n(p-Au)$ observed experimentally for central collisions is reproduced.The calculated elliptic flow $v_2$ at central collisions agrees satisfactorily with thedata. The triangular flow $v_3$ is found to be greater than the experimental values, similar to the resultsobtained in the approach based on the Color Glass Condensate initial conditions with subsequenthydrodynamical evolution.