We study dimensionally restricted non-perturbative causal set quantum dynamics in $2$ and $3$ spacetime dimensions with non-trivial global spatial topology. The causal set sample space is generated from causal embeddings into spacetime lattices with global spatial topology $S^1$ and $T^2$ in $2$ and $3$ dimensions, respectively. The quantum gravity partition function over these sample spaces is studied using Markov Chain Monte Carlo (MCMC) simulations after analytic continuation. In both $2$ and $3$ dimensions we find a phase transition that separates the dominance of the action from that of the entropy. The action dominated phase is characterised by ``layered posets with a high degree of connectivity, while the causal sets in the entropy dominated phase are manifold-like. This phase transition is similar in character to that seen for the sample space of $2$-orders, which are topologically trivial, hence suggesting that this is a generic feature of dimensionally restricted sample spaces. The simulations use a newly developed framework for causal set MCMC calculations. Ours is the first implementation of a causal set dynamics restricted to $3$ dimensions.
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