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Locality preserving projections (LPP) are a classical dimensionality reduction method based on data graph information. However, LPP is still responsive to extreme outliers. LPP aiming for vectorial data may undermine data structural information when it is applied to multidimensional data. Besides, it assumes the dimension of data to be smaller than the number of instances, which is not suitable for high-dimensional data. For high-dimensional data analysis, the tensor-train decomposition is proved to be able to efficiently and effectively capture the spatial relations. Thus, we propose a tensor-train parameterization for ultra dimensionality reduction (TTPUDR) in which the traditional LPP mapping is tensorized in terms of tensor-trains and the LPP objective is replaced with the Frobenius norm to increase the robustness of the model. The manifold optimization technique is utilized to solve the new model. The performance of TTPUDR is assessed on classification problems and TTPUDR significantly outperforms the past methods and the several state-of-the-art methods.
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Most methods for dimensionality reduction are based on either tensor representation or local geometry learning. However, the tensor-based methods severely rely on the assumption of global and multilinear structures in high-dimensional data; and the manifold learning methods suffer from the out-of-sample problem. In this paper, bridging the tensor decomposition and manifold learning, we propose a novel method, called Hypergraph Regularized Nonnegative Tensor Factorization (HyperNTF). HyperNTF can preserve nonnegativity in tensor factorization, and uncover the higher-order relationship among the nearest neighborhoods. Clustering analysis with HyperNTF has low computation and storage costs. The experiments on four synthetic data show a desirable property of hypergraph in uncovering the high-order correlation to unfold the curved manifolds. Moreover, the numerical experiments on six real datasets suggest that HyperNTF robustly outperforms state-of-the-art algorithms in clustering analysis.
According to the National Academies, a weekly forecast of velocity, vertical structure, and duration of the Loop Current (LC) and its eddies is critical for understanding the oceanography and ecosystem, and for mitigating outcomes of anthropogenic and natural disasters in the Gulf of Mexico (GoM). However, this forecast is a challenging problem since the LC behaviour is dominated by long-range spatial connections across multiple timescales. In this paper, we extend spatiotemporal predictive learning, showing its effectiveness beyond video prediction, to a 4D model, i.e., a novel Physics-informed Tensor-train ConvLSTM (PITT-ConvLSTM) for temporal sequences of 3D geospatial data forecasting. Specifically, we propose 1) a novel 4D higher-order recurrent neural network with empirical orthogonal function analysis to capture the hidden uncorrelated patterns of each hierarchy, 2) a convolutional tensor-train decomposition to capture higher-order space-time correlations, and 3) to incorporate prior physic knowledge that is provided from domain experts by informing the learning in latent space. The advantage of our proposed method is clear: constrained by physical laws, it simultaneously learns good representations for frame dependencies (both short-term and long-term high-level dependency) and inter-hierarchical relations within each time frame. Experiments on geospatial data collected from the GoM demonstrate that PITT-ConvLSTM outperforms the state-of-the-art methods in forecasting the volumetric velocity of the LC and its eddies for a period of over one week.
Recently, a novel family of biologically plausible online algorithms for reducing the dimensionality of streaming data has been derived from the similarity matching principle. In these algorithms, the number of output dimensions can be determined adaptively by thresholding the singular values of the input data matrix. However, setting such threshold requires knowing the magnitude of the desired singular values in advance. Here we propose online algorithms where the threshold is self-calibrating based on the singular values computed from the existing observations. To derive these algorithms from the similarity matching cost function we propose novel regularizers. As before, these online algorithms can be implemented by Hebbian/anti-Hebbian neural networks in which the learning rule depends on the chosen regularizer. We demonstrate both mathematically and via simulation the effectiveness of these online algorithms in various settings.
Manifold learning-based encoders have been playing important roles in nonlinear dimensionality reduction (NLDR) for data exploration. However, existing methods can often fail to preserve geometric, topological and/or distributional structures of data. In this paper, we propose a deep manifold learning framework, called deep manifold transformation (DMT) for unsupervised NLDR and embedding learning. DMT enhances deep neural networks by using cross-layer local geometry-preserving (LGP) constraints. The LGP constraints constitute the loss for deep manifold learning and serve as geometric regularizers for NLDR network training. Extensive experiments on synthetic and real-world data demonstrate that DMT networks outperform existing leading manifold-based NLDR methods in terms of preserving the structures of data.
Low-dimensional embeddings for data from disparate sources play critical roles in multi-modal machine learning, multimedia information retrieval, and bioinformatics. In this paper, we propose a supervised dimensionality reduction method that learns linear embeddings jointly for two feature vectors representing data of different modalities or data from distinct types of entities. We also propose an efficient feature selection method that complements, and can be applied prior to, our joint dimensionality reduction method. Assuming that there exist true linear embeddings for these features, our analysis of the error in the learned linear embeddings provides theoretical guarantees that the dimensionality reduction method accurately estimates the true embeddings when certain technical conditions are satisfied and the number of samples is sufficiently large. The derived sample complexity results are echoed by numerical experiments. We apply the proposed dimensionality reduction method to gene-disease association, and predict unknown associations using kernel regression on the dimension-reduced feature vectors. Our approach compares favorably against other dimensionality reduction methods, and against a state-of-the-art method of bilinear regression for predicting gene-disease associations.
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