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Register a new userIncorporating Temporal Prior from Motion Flow for Instrument Segmentation in Minimally Invasive Surgery Video
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Added by
Yueming Jin
Publication date
2019
fields
Informatics Engineering
and research's language is
English
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Automatic instrument segmentation in video is an essentially fundamental yet challenging problem for robot-assisted minimally invasive surgery. In this paper, we propose a novel framework to leverage instrument motion information, by incorporating a derived temporal prior to an attention pyramid network for accurate segmentation. Our inferred prior can provide reliable indication of the instrument location and shape, which is propagated from the previous frame to the current frame according to inter-frame motion flow. This prior is injected to the middle of an encoder-decoder segmentation network as an initialization of a pyramid of attention modules, to explicitly guide segmentation output from coarse to fine. In this way, the temporal dynamics and the attention network can effectively complement and benefit each other. As additional usage, our temporal prior enables semi-supervised learning with periodically unlabeled video frames, simply by reverse execution. We extensively validate our method on the public 2017 MICCAI EndoVis Robotic Instrument Segmentation Challenge dataset with three different tasks. Our method consistently exceeds the state-of-the-art results across all three tasks by a large margin. Our semi-supervised variant also demonstrates a promising potential for reducing annotation cost in the clinical practice.
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This paper reports a CPU-level real-time stereo matching method for surgical images (10 Hz on 640 * 480 image with a single core of i5-9400). The proposed method is built on the fast dense inverse searching algorithm, which estimates the disparity of the stereo images. The overlapping image patches (arbitrary squared image segment) from the images at different scales are aligned based on the photometric consistency presumption. We propose a Bayesian framework to evaluate the probability of the optimized patch disparity at different scales. Moreover, we introduce a spatial Gaussian mixed probability distribution to address the pixel-wise probability within the patch. In-vivo and synthetic experiments show that our method can handle ambiguities resulted from the textureless surfaces and the photometric inconsistency caused by the Lambertian reflectance. Our Bayesian method correctly balances the probability of the patch for stereo images at different scales. Experiments indicate that the estimated depth has higher accuracy and fewer outliers than the baseline methods in the surgical scenario.
Estimating the remaining surgery duration (RSD) during surgical procedures can be useful for OR planning and anesthesia dose estimation. With the recent success of deep learning-based methods in computer vision, several neural network approaches have been proposed for fully automatic RSD prediction based solely on visual data from the endoscopic camera. We investigate whether RSD prediction can be improved using unsupervised temporal video segmentation as an auxiliary learning task. As opposed to previous work, which presented supervised surgical phase recognition as auxiliary task, we avoid the need for manual annotations by proposing a similar but unsupervised learning objective which clusters video sequences into temporally coherent segments. In multiple experimental setups, results obtained by learning the auxiliary task are incorporated into a deep RSD model through feature extraction, pretraining or regularization. Further, we propose a novel loss function for RSD training which attempts to counteract unfavorable characteristics of the RSD ground truth. Using our unsupervised method as an auxiliary task for RSD training, we outperform other self-supervised methods and are comparable to the supervised state-of-the-art. Combined with the novel RSD loss, we slightly outperform the supervised approach.
Crowd segmentation is a fundamental task serving as the basis of crowded scene analysis, and it is highly desirable to obtain refined pixel-level segmentation maps. However, it remains a challenging problem, as existing approaches either require dense pixel-level annotations to train deep learning models or merely produce rough segmentation maps from optical or particle flows with physical models. In this paper, we propose the Motion Prior-Aware Siamese Network (MPASNET) for unsupervised crowd semantic segmentation. This model not only eliminates the need for annotation but also yields high-quality segmentation maps. Specially, we first analyze the coherent motion patterns across the frames and then apply a circular region merging strategy on the collective particles to generate pseudo-labels. Moreover, we equip MPASNET with siamese branches for augmentation-invariant regularization and siamese feature aggregation. Experiments over benchmark datasets indicate that our model outperforms the state-of-the-arts by more than 12% in terms of mIoU.
We propose a new method for six-degree-of-freedom (6-DoF) autonomous camera movement for minimally invasive surgery, which, unlike previous methods, takes into account both the position and orientation information from structures in the surgical scene. In addition to locating the camera for a good view of the manipulated object, our autonomous camera takes into account workspace constraints, including the horizon and safety constraints. We developed a simulation environment to test our method on the wire chaser surgical training task from validated training curricula in conventional laparoscopy and robot-assisted surgery. Furthermore, we propose, for the first time, the application of the proposed autonomous camera method in video-based surgical skill assessment, an area where videos are typically recorded using fixed cameras. In a study with N=30 human subjects, we show that video examination of the autonomous camera view as it tracks the ring motion over the wire leads to more accurate user error (ring touching the wire) detection than when using a fixed camera view, or camera movement with a fixed orientation. Our preliminary work suggests that there are potential benefits to autonomous camera positioning informed by scene orientation, and this can direct designers of automated endoscopes and surgical robotic systems, especially when using chip-on-tip cameras that can be wristed for 6-DoF motion.
Applying image processing algorithms independently to each video frame often leads to temporal inconsistency in the resulting video. To address this issue, we present a novel and general approach for blind video temporal consistency. Our method is only trained on a pair of original and processed videos directly instead of a large dataset. Unlike most previous methods that enforce temporal consistency with optical flow, we show that temporal consistency can be achieved by training a convolutional network on a video with the Deep Video Prior. Moreover, a carefully designed iteratively reweighted training strategy is proposed to address the challenging multimodal inconsistency problem. We demonstrate the effectiveness of our approach on 7 computer vision tasks on videos. Extensive quantitative and perceptual experiments show that our approach obtains superior performance than state-of-the-art methods on blind video temporal consistency. Our source codes are publicly available at github.com/ChenyangLEI/deep-video-prior.
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