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Register a new userImproved ICH classification using task-dependent learning
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Added by
Amir Bar
Publication date
2019
fields
Informatics Engineering
and research's language is
English
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Head CT is one of the most commonly performed imaging studied in the Emergency Department setting and Intracranial hemorrhage (ICH) is among the most critical and timesensitive findings to be detected on Head CT. We present BloodNet, a deep learning architecture designed for optimal triaging of Head CTs, with the goal of decreasing the time from CT acquisition to accurate ICH detection. The BloodNet architecture incorporates dependency between the otherwise independent tasks of segmentation and classification, achieving improved classification results. AUCs of 0.9493 and 0.9566 are reported on held out positive-enriched and randomly sampled sets comprised of over 1400 studies acquired from over 10 different hospitals. These results are comparable to previously reported results with smaller number of tagged studies.
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As our population ages, neurological impairments and degeneration of the musculoskeletal system yield gait abnormalities, which can significantly reduce quality of life. Gait rehabilitative therapy has been widely adopted to help patients maximize community participation and living independence. To further improve the precision and efficiency of rehabilitative therapy, more objective methods need to be developed based on sensory data. In this paper, an algorithmic framework is proposed to provide classification of gait disorders caused by two common neurological diseases, stroke and Parkinsons Disease (PD), from ground contact force (GCF) data. An advanced machine learning method, multi-task feature learning (MTFL), is used to jointly train classification models of a subjects gait in three classes, post-stroke, PD and healthy gait. Gait parameters related to mobility, balance, strength and rhythm are used as features for the classification. Out of all the features used, the MTFL models capture the more important ones per disease, which will help provide better objective assessment and therapy progress tracking. To evaluate the proposed methodology we use data from a human participant study, which includes five PD patients, three post-stroke patients, and three healthy subjects. Despite the diversity of abnormalities, the evaluation shows that the proposed approach can successfully distinguish post-stroke and PD gait from healthy gait, as well as post-stroke from PD gait, with Area Under the Curve (AUC) score of at least 0.96. Moreover, the methodology helps select important gait features to better understand the key characteristics that distinguish abnormal gaits and design personalized treatment.
Detecting and aggregating sentiments toward people, organizations, and events expressed in unstructured social media have become critical text mining operations. Early systems detected sentiments over whole passages, whereas more recently, target-specific sentiments have been of greater interest. In this paper, we present MTTDSC, a multi-task target-dependent sentiment classification system that is informed by feature representation learnt for the related auxiliary task of passage-level sentiment classification. The auxiliary task uses a gated recurrent unit (GRU) and pools GRU states, followed by an auxiliary fully-connected layer that outputs passage-level predictions. In the main task, these GRUs contribute auxiliary per-token representations over and above word embeddings. The main task has its own, separate GRUs. The auxiliary and main GRUs send their states to a different fully connected layer, trained for the main task. Extensive experiments using two auxiliary datasets and three benchmark datasets (of which one is new, introduced by us) for the main task demonstrate that MTTDSC outperforms state-of-the-art baselines. Using word-level sensitivity analysis, we present anecdotal evidence that prior systems can make incorrect target-specific predictions because they miss sentiments expressed by words independent of target.
Recent research in disaster informatics demonstrates a practical and important use case of artificial intelligence to save human lives and sufferings during post-natural disasters based on social media contents (text and images). While notable progress has been made using texts, research on exploiting the images remains relatively under-explored. To advance the image-based approach, we propose MEDIC (available at: https://crisisnlp.qcri.org/medic/index.html), which is the largest social media image classification dataset for humanitarian response consisting of 71,198 images to address four different tasks in a multi-task learning setup. This is the first dataset of its kind: social media image, disaster response, and multi-task learning research. An important property of this dataset is its high potential to contribute research on multi-task learning, which recently receives much interest from the machine learning community and has shown remarkable results in terms of memory, inference speed, performance, and generalization capability. Therefore, the proposed dataset is an important resource for advancing image-based disaster management and multi-task machine learning research.
Medical imaging datasets usually exhibit domain shift due to the variations of scanner vendors, imaging protocols, etc. This raises the concern about the generalization capacity of machine learning models. Domain generalization (DG), which aims to learn a model from multiple source domains such that it can be directly generalized to unseen test domains, seems particularly promising to medical imaging community. To address DG, recent model-agnostic meta-learning (MAML) has been introduced, which transfers the knowledge from previous training tasks to facilitate the learning of novel testing tasks. However, in clinical practice, there are usually only a few annotated source domains available, which decreases the capacity of training task generation and thus increases the risk of overfitting to training tasks in the paradigm. In this paper, we propose a novel DG scheme of episodic training with task augmentation on medical imaging classification. Based on meta-learning, we develop the paradigm of episodic training to construct the knowledge transfer from episodic training-task simulation to the real testing task of DG. Motivated by the limited number of source domains in real-world medical deployment, we consider the unique task-level overfitting and we propose task augmentation to enhance the variety during training task generation to alleviate it. With the established learning framework, we further exploit a novel meta-objective to regularize the deep embedding of training domains. To validate the effectiveness of the proposed method, we perform experiments on histopathological images and abdominal CT images.
Deep Neural Networks (or DNNs) must constantly cope with distribution changes in the input data when the task of interest or the data collection protocol changes. Retraining a network from scratch to combat this issue poses a significant cost. Meta-learning aims to deliver an adaptive model that is sensitive to these underlying distribution changes, but requires many tasks during the meta-training process. In this paper, we propose a tAsk-auGmented actIve meta-LEarning (AGILE) method to efficiently adapt DNNs to new tasks by using a small number of training examples. AGILE combines a meta-learning algorithm with a novel task augmentation technique which we use to generate an initial adaptive model. It then uses Bayesian dropout uncertainty estimates to actively select the most difficult samples when updating the model to a new task. This allows AGILE to learn with fewer tasks and a few informative samples, achieving high performance with a limited dataset. We perform our experiments using the brain cell classification task and compare the results to a plain meta-learning model trained from scratch. We show that the proposed task-augmented meta-learning framework can learn to classify new cell types after a single gradient step with a limited number of training samples. We show that active learning with Bayesian uncertainty can further improve the performance when the number of training samples is extremely small. Using only 1% of the training data and a single update step, we achieved 90% accuracy on the new cell type classification task, a 50% points improvement over a state-of-the-art meta-learning algorithm.
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