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Register a new userUnsupervised Feature Learning with K-means and An Ensemble of Deep Convolutional Neural Networks for Medical Image Classification
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Added by
Euijoon Ahn
Publication date
2019
fields
Informatics Engineering
and research's language is
English
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Medical image analysis using supervised deep learning methods remains problematic because of the reliance of deep learning methods on large amounts of labelled training data. Although medical imaging data repositories continue to expand there has not been a commensurate increase in the amount of annotated data. Hence, we propose a new unsupervised feature learning method that learns feature representations to then differentiate dissimilar medical images using an ensemble of different convolutional neural networks (CNNs) and K-means clustering. It jointly learns feature representations and clustering assignments in an end-to-end fashion. We tested our approach on a public medical dataset and show its accuracy was better than state-of-the-art unsupervised feature learning methods and comparable to state-of-the-art supervised CNNs. Our findings suggest that our method could be used to tackle the issue of the large volume of unlabelled data in medical imaging repositories.
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The accuracy and robustness of image classification with supervised deep learning are dependent on the availability of large-scale, annotated training data. However, there is a paucity of annotated data available due to the complexity of manual annotation. To overcome this problem, a popular approach is to use transferable knowledge across different domains by: 1) using a generic feature extractor that has been pre-trained on large-scale general images (i.e., transfer-learned) but which not suited to capture characteristics from medical images; or 2) fine-tuning generic knowledge with a relatively smaller number of annotated images. Our aim is to reduce the reliance on annotated training data by using a new hierarchical unsupervised feature extractor with a convolutional auto-encoder placed atop of a pre-trained convolutional neural network. Our approach constrains the rich and generic image features from the pre-trained domain to a sophisticated representation of the local image characteristics from the unannotated medical image domain. Our approach has a higher classification accuracy than transfer-learned approaches and is competitive with state-of-the-art supervised fine-tuned methods.
Deep convolutional networks have proven to be very successful in learning task specific features that allow for unprecedented performance on various computer vision tasks. Training of such networks follows mostly the supervised learning paradigm, where sufficiently many input-output pairs are required for training. Acquisition of large training sets is one of the key challenges, when approaching a new task. In this paper, we aim for generic feature learning and present an approach for training a convolutional network using only unlabeled data. To this end, we train the network to discriminate between a set of surrogate classes. Each surrogate class is formed by applying a variety of transformations to a randomly sampled seed image patch. In contrast to supervised network training, the resulting feature representation is not class specific. It rather provides robustness to the transformations that have been applied during training. This generic feature representation allows for classification results that outperform the state of the art for unsupervised learning on several popular datasets (STL-10, CIFAR-10, Caltech-101, Caltech-256). While such generic features cannot compete with class specific features from supervised training on a classification task, we show that they are advantageous on geometric matching problems, where they also outperform the SIFT descriptor.
Convolutional neural networks (CNNs) have achieved state-of-the-art results on many visual recognition tasks. However, current CNN models still exhibit a poor ability to be invariant to spatial transformations of images. Intuitively, with sufficient layers and parameters, hierarchical combinations of convolution (matrix multiplication and non-linear activation) and pooling operations should be able to learn a robust mapping from transformed input images to transform-invariant representations. In this paper, we propose randomly transforming (rotation, scale, and translation) feature maps of CNNs during the training stage. This prevents complex dependencies of specific rotation, scale, and translation levels of training images in CNN models. Rather, each convolutional kernel learns to detect a feature that is generally helpful for producing the transform-invariant answer given the combinatorially large variety of transform levels of its input feature maps. In this way, we do not require any extra training supervision or modification to the optimization process and training images. We show that random transformation provides significant improvements of CNNs on many benchmark tasks, including small-scale image recognition, large-scale image recognition, and image retrieval. The code is available at https://github.com/jasonustc/caffe-multigpu/tree/TICNN.
Despite the effectiveness of Convolutional Neural Networks (CNNs) for image classification, our understanding of the relationship between shape of convolution kernels and learned representations is limited. In this work, we explore and employ the relationship between shape of kernels which define Receptive Fields (RFs) in CNNs for learning of feature representations and image classification. For this purpose, we first propose a feature visualization method for visualization of pixel-wise classification score maps of learned features. Motivated by our experimental results, and observations reported in the literature for modeling of visual systems, we propose a novel design of shape of kernels for learning of representations in CNNs. In the experimental results, we achieved a state-of-the-art classification performance compared to a base CNN model [28] by reducing the number of parameters and computational time of the model using the ILSVRC-2012 dataset [24]. The proposed models also outperform the state-of-the-art models employed on the CIFAR-10/100 datasets [12] for image classification. Additionally, we analyzed the robustness of the proposed method to occlusion for classification of partially occluded images compared with the state-of-the-art methods. Our results indicate the effectiveness of the proposed approach. The code is available in github.com/minogame/caffe-qhconv.
Deformable image registration is widely utilized in medical image analysis, but most proposed methods fail in the situation of complex deformations. In this paper, we pre-sent a cascaded feature warping network to perform the coarse-to-fine registration. To achieve this, a shared-weights encoder network is adopted to generate the feature pyramids for the unaligned images. The feature warping registration module is then used to estimate the deformation field at each level. The coarse-to-fine manner is implemented by cascading the module from the bottom level to the top level. Furthermore, the multi-scale loss is also introduced to boost the registration performance. We employ two public benchmark datasets and conduct various experiments to evaluate our method. The results show that our method outperforms the state-of-the-art methods, which also demonstrates that the cascaded feature warping network can perform the coarse-to-fine registration effectively and efficiently.
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