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Substring kernels are classical tools for representing biological sequences or text. However, when large amounts of annotated data are available, models that allow end-to-end training such as neural networks are often preferred. Links between recurrent neural networks (RNNs) and substring kernels have recently been drawn, by formally showing that RNNs with specific activation functions were points in a reproducing kernel Hilbert space (RKHS). In this paper, we revisit this link by generalizing convolutional kernel networks---originally related to a relaxation of the mismatch kernel---to model gaps in sequences. It results in a new type of recurrent neural network which can be trained end-to-end with backpropagation, or without supervision by using kernel approximation techniques. We experimentally show that our approach is well suited to biological sequences, where it outperforms existing methods for protein classification tasks.
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Recurrent neural networks (RNNs) are powerful architectures to model sequential data, due to their capability to learn short and long-term dependencies between the basic elements of a sequence. Nonetheless, popular tasks such as speech or images recognition, involve multi-dimensional input features that are characterized by strong internal dependencies between the dimensions of the input vector. We propose a novel quaternion recurrent neural network (QRNN), alongside with a quaternion long-short term memory neural network (QLSTM), that take into account both the external relations and these internal structural dependencies with the quaternion algebra. Similarly to capsules, quaternions allow the QRNN to code internal dependencies by composing and processing multidimensional features as single entities, while the recurrent operation reveals correlations between the elements composing the sequence. We show that both QRNN and QLSTM achieve better performances than RNN and LSTM in a realistic application of automatic speech recognition. Finally, we show that QRNN and QLSTM reduce by a maximum factor of 3.3x the number of free parameters needed, compared to real-valued RNNs and LSTMs to reach better results, leading to a more compact representation of the relevant information.
We provide a general framework for studying recurrent neural networks (RNNs) trained by injecting noise into hidden states. Specifically, we consider RNNs that can be viewed as discretizations of stochastic differential equations driven by input data. This framework allows us to study the implicit regularization effect of general noise injection schemes by deriving an approximate explicit regularizer in the small noise regime. We find that, under reasonable assumptions, this implicit regularization promotes flatter minima; it biases towards models with more stable dynamics; and, in classification tasks, it favors models with larger classification margin. Sufficient conditions for global stability are obtained, highlighting the phenomenon of stochastic stabilization, where noise injection can improve stability during training. Our theory is supported by empirical results which demonstrate improved robustness with respect to various input perturbations, while maintaining state-of-the-art performance.
We introduce a family of multilayer graph kernels and establish new links between graph convolutional neural networks and kernel methods. Our approach generalizes convolutional kernel networks to graph-structured data, by representing graphs as a sequence of kernel feature maps, where each node carries information about local graph substructures. On the one hand, the kernel point of view offers an unsupervised, expressive, and easy-to-regularize data representation, which is useful when limited samples are available. On the other hand, our model can also be trained end-to-end on large-scale data, leading to new types of graph convolutional neural networks. We show that our method achieves competitive performance on several graph classification benchmarks, while offering simple model interpretation. Our code is freely available at https://github.com/claying/GCKN.
For a certain scaling of the initialization of stochastic gradient descent (SGD), wide neural networks (NN) have been shown to be well approximated by reproducing kernel Hilbert space (RKHS) methods. Recent empirical work showed that, for some classification tasks, RKHS methods can replace NNs without a large loss in performance. On the other hand, two-layers NNs are known to encode richer smoothness classes than RKHS and we know of special examples for which SGD-trained NN provably outperform RKHS. This is true even in the wide network limit, for a different scaling of the initialization. How can we reconcile the above claims? For which tasks do NNs outperform RKHS? If feature vectors are nearly isotropic, RKHS methods suffer from the curse of dimensionality, while NNs can overcome it by learning the best low-dimensional representation. Here we show that this curse of dimensionality becomes milder if the feature vectors display the same low-dimensional structure as the target function, and we precisely characterize this tradeoff. Building on these results, we present a model that can capture in a unified framework both behaviors observed in earlier work. We hypothesize that such a latent low-dimensional structure is present in image classification. We test numerically this hypothesis by showing that specific perturbations of the training distribution degrade the performances of RKHS methods much more significantly than NNs.
We propose a new point of view for regularizing deep neural networks by using the norm of a reproducing kernel Hilbert space (RKHS). Even though this norm cannot be computed, it admits upper and lower approximations leading to various practical strategies. Specifically, this perspective (i) provides a common umbrella for many existing regularization principles, including spectral norm and gradient penalties, or adversarial training, (ii) leads to new effective regularization penalties, and (iii) suggests hybrid strategies combining lower and upper bounds to get better approximations of the RKHS norm. We experimentally show this approach to be effective when learning on small datasets, or to obtain adversarially robust models.
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