Subscribe to the gold package and get unlimited access to Shamra Academy
Register a new userRegistration of retinal images from Public Health by minimising an error between vessels using an affine model with radial distortions
99
0
0.0
(
0
)
Ask ChatGPT about the research
No Arabic abstract
In order to estimate a registration model of eye fundus images made of an affinity and two radial distortions, we introduce an estimation criterion based on an error between the vessels. In [1], we estimated this model by minimising the error between characteristics points. In this paper, the detected vessels are selected using the circle and ellipse equations of the overlap area boundaries deduced from our model. Our method successfully registers 96 % of the 271 pairs in a Public Health dataset acquired mostly with different cameras. This is better than our previous method [1] and better than three other state-of-the-art methods. On a publicly available dataset, ours still better register the images than the reference method.
rate research
Read More
We analyze a dataset of retinal images using linear probes: linear regression models trained on some target task, using embeddings from a deep convolutional (CNN) model trained on some source task as input. We use this method across all possible pairings of 93 tasks in the UK Biobank dataset of retinal images, leading to ~164k different models. We analyze the performance of these linear probes by source and target task and by layer depth. We observe that representations from the middle layers of the network are more generalizable. We find that some target tasks are easily predicted irrespective of the source task, and that some other target tasks are more accurately predicted from correlated source tasks than from embeddings trained on the same task.
Medical image segmentation is an important task for computer aided diagnosis. Pixelwise manual annotations of large datasets require high expertise and is time consuming. Conventional data augmentations have limited benefit by not fully representing the underlying distribution of the training set, thus affecting model robustness when tested on images captured from different sources. Prior work leverages synthetic images for data augmentation ignoring the interleaved geometric relationship between different anatomical labels. We propose improvements over previous GAN-based medical image synthesis methods by jointly encoding the intrinsic relationship of geometry and shape. Latent space variable sampling results in diverse generated images from a base image and improves robustness. Given those augmented images generated by our method, we train the segmentation network to enhance the segmentation performance of retinal optical coherence tomography (OCT) images. The proposed method outperforms state-of-the-art segmentation methods on the public RETOUCH dataset having images captured from different acquisition procedures. Ablation studies and visual analysis also demonstrate benefits of integrating geometry and diversity.
Registration of 3D anatomic structures to their 2D dual fluoroscopic X-ray images is a widely used motion tracking technique. However, deep learning implementation is often impeded by a paucity of medical images and ground truths. In this study, we proposed a transfer learning strategy for 3D-to-2D registration using deep neural networks trained from an artificial dataset. Digitally reconstructed radiographs (DRRs) and radiographic skull landmarks were automatically created from craniocervical CT data of a female subject. They were used to train a residual network (ResNet) for landmark detection and a cycle generative adversarial network (GAN) to eliminate the style difference between DRRs and actual X-rays. Landmarks on the X-rays experiencing GAN style translation were detected by the ResNet, and were used in triangulation optimization for 3D-to-2D registration of the skull in actual dual-fluoroscope images (with a non-orthogonal setup, point X-ray sources, image distortions, and partially captured skull regions). The registration accuracy was evaluated in multiple scenarios of craniocervical motions. In walking, learning-based registration for the skull had angular/position errors of 3.9 +- 2.1 deg / 4.6 +- 2.2 mm. However, the accuracy was lower during functional neck activity, due to overly small skull regions imaged on the dual fluoroscopic images at end-range positions. The methodology to strategically augment artificial training data can tackle the complicated skull registration scenario, and has potentials to extend to widespread registration scenarios.
Refractive error, one of the leading cause of visual impairment, can be corrected by simple interventions like prescribing eyeglasses. We trained a deep learning algorithm to predict refractive error from the fundus photographs from participants in the UK Biobank cohort, which were 45 degree field of view images and the AREDS clinical trial, which contained 30 degree field of view images. Our model use the attention method to identify features that are correlated with refractive error. Mean absolute error (MAE) of the algorithms prediction compared to the refractive error obtained in the AREDS and UK Biobank. The resulting algorithm had a MAE of 0.56 diopters (95% CI: 0.55-0.56) for estimating spherical equivalent on the UK Biobank dataset and 0.91 diopters (95% CI: 0.89-0.92) for the AREDS dataset. The baseline expected MAE (obtained by simply predicting the mean of this population) was 1.81 diopters (95% CI: 1.79-1.84) for UK Biobank and 1.63 (95% CI: 1.60-1.67) for AREDS. Attention maps suggested that the foveal region was one of the most important areas used by the algorithm to make this prediction, though other regions also contribute to the prediction. The ability to estimate refractive error with high accuracy from retinal fundus photos has not been previously known and demonstrates that deep learning can be applied to make novel predictions from medical images. Given that several groups have recently shown that it is feasible to obtain retinal fundus photos using mobile phones and inexpensive attachments, this work may be particularly relevant in regions of the world where autorefractors may not be readily available.
Accurate estimation of cancer mortality rates and the comparison across cancer sites, populations or time periods is crucial to public health, as identification of vulnerable groups who suffer the most from these diseases may lead to efficient cancer care and control with timely treatment. Because cancer mortality rate varies with age, comparisons require age-standardization using a reference population. The current method of using the Year 2000 Population Standard is standard practice, but serious concerns have been raised about its lack of justification. We have found that using the US Year 2000 Population Standard as reference overestimates prostate cancer mortality rates by 12-91% during the period 1970-2009 across all six sampled U.S. states, and also underestimates case fatality rates by 9-78% across six cancer sites, including female breast, cervix, prostate, lung, leukemia and colon-rectum. We develop a mean reference population method to minimize the bias using mathematical optimization theory and statistical modeling. The method corrects the bias to the largest extent in terms of squared loss and can be applied broadly to studies of many diseases.
Log in to be able to interact and post comments
comments
Fetching comments
Sign in to be able to follow your search criteria
