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Register a new userEnd-to-end Sleep Staging with Raw Single Channel EEG using Deep Residual ConvNets
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Added by
Ahmed Imtiaz Humayun
Publication date
2019
fields
Informatics Engineering
and research's language is
English
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Humans approximately spend a third of their life sleeping, which makes monitoring sleep an integral part of well-being. In this paper, a 34-layer deep residual ConvNet architecture for end-to-end sleep staging is proposed. The network takes raw single channel electroencephalogram (Fpz-Cz) signal as input and yields hypnogram annotations for each 30s segments as output. Experiments are carried out for two different scoring standards (5 and 6 stage classification) on the expanded PhysioNet Sleep-EDF dataset, which contains multi-source data from hospital and household polysomnography setups. The performance of the proposed network is compared with that of the state-of-the-art algorithms in patient independent validation tasks. The experimental results demonstrate the superiority of the proposed network compared to the best existing method, providing a relative improvement in epoch-wise average accuracy of 6.8% and 6.3% on the household data and multi-source data, respectively. Codes are made publicly available on Github.
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Many sleep studies suffer from the problem of insufficient data to fully utilize deep neural networks as different labs use different recordings set ups, leading to the need of training automated algorithms on rather small databases, whereas large annotated databases are around but cannot be directly included into these studies for data compensation due to channel mismatch. This work presents a deep transfer learning approach to overcome the channel mismatch problem and transfer knowledge from a large dataset to a small cohort to study automatic sleep staging with single-channel input. We employ the state-of-the-art SeqSleepNet and train the network in the source domain, i.e. the large dataset. Afterwards, the pretrained network is finetuned in the target domain, i.e. the small cohort, to complete knowledge transfer. We study two transfer learning scenarios with slight and heavy channel mismatch between the source and target domains. We also investigate whether, and if so, how finetuning entirely or partially the pretrained network would affect the performance of sleep staging on the target domain. Using the Montreal Archive of Sleep Studies (MASS) database consisting of 200 subjects as the source domain and the Sleep-EDF Expanded database consisting of 20 subjects as the target domain in this study, our experimental results show significant performance improvement on sleep staging achieved with the proposed deep transfer learning approach. Furthermore, these results also reveal the essential of finetuning the feature-learning parts of the pretrained network to be able to bypass the channel mismatch problem.
EEG signals are usually simple to obtain but expensive to label. Although supervised learning has been widely used in the field of EEG signal analysis, its generalization performance is limited by the amount of annotated data. Self-supervised learning (SSL), as a popular learning paradigm in computer vision (CV) and natural language processing (NLP), can employ unlabeled data to make up for the data shortage of supervised learning. In this paper, we propose a self-supervised contrastive learning method of EEG signals for sleep stage classification. During the training process, we set up a pretext task for the network in order to match the right transformation pairs generated from EEG signals. In this way, the network improves the representation ability by learning the general features of EEG signals. The robustness of the network also gets improved in dealing with diverse data, that is, extracting constant features from changing data. In detail, the networks performance depends on the choice of transformations and the amount of unlabeled data used in the training process of self-supervised learning. Empirical evaluations on the Sleep-edf dataset demonstrate the competitive performance of our method on sleep staging (88.16% accuracy and 81.96% F1 score) and verify the effectiveness of SSL strategy for EEG signal analysis in limited labeled data regimes. All codes are provided publicly online.
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