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Register a new userBeyond topological persistence: Starting from networks
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Persistent homology enables fast and computable comparison of topological objects. However, it is naturally limited to the analysis of topological spaces. We extend the theory of persistence, by guaranteeing robustness and computability to significant data types as simple graphs and quivers. We focus on categorical persistence functions that allow us to study in full generality strong kinds of connectedness such as clique communities, $k$-vertex and $k$-edge connectedness directly on simple graphs and monic coherent categories.
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Graphs are a basic tool for the representation of modern data. The richness of the topological information contained in a graph goes far beyond its mere interpretation as a one-dimensional simplicial complex. We show how topological constructions can be used to gain information otherwise concealed by the low-dimensional nature of graphs. We do that by extending previous work of other researchers in homological persistence, by proposing novel graph-theoretical constructions. Beyond cliques, we use independent sets, neighborhoods, enclaveless sets and a Ramsey-inspired extended persistence.
Tverberg-type theory aims to establish sufficient conditions for a simplicial complex $Sigma$ such that every continuous map $fcolon Sigma to mathbb{R}^d$ maps $q$ points from pairwise disjoint faces to the same point in $mathbb{R}^d$. Such results are plentiful for $q$ a power of a prime. However, for $q$ with at least two distinct prime divisors, results that guarantee the existence of $q$-fold points of coincidence are non-existent---aside from immediate corollaries of the prime power case. Here we present a general method that yields such results beyond the case of prime powers. In particular, we prove previously conjectured upper bounds for the topological Tverberg problem for all $q$.
Although neural networks are capable of reaching astonishing performances on a wide variety of contexts, properly training networks on complicated tasks requires expertise and can be expensive from a computational perspective. In industrial applications, data coming from an open-world setting might widely differ from the benchmark datasets on which a network was trained. Being able to monitor the presence of such variations without retraining the network is of crucial importance. In this article, we develop a method to monitor trained neural networks based on the topological properties of their activation graphs. To each new observation, we assign a Topological Uncertainty, a score that aims to assess the reliability of the predictions by investigating the whole network instead of its final layer only, as typically done by practitioners. Our approach entirely works at a post-training level and does not require any assumption on the network architecture, optimization scheme, nor the use of data augmentation or auxiliary datasets; and can be faithfully applied on a large range of network architectures and data types. We showcase experimentally the potential of Topological Uncertainty in the context of trained network selection, Out-Of-Distribution detection, and shift-detection, both on synthetic and real datasets of images and graphs.
Algorithms for persistent homology and zigzag persistent homology are well-studied for persistence modules where homomorphisms are induced by inclusion maps. In this paper, we propose a practical algorithm for computing persistence under $mathbb{Z}_2$ coefficients for a sequence of general simplicial maps and show how these maps arise naturally in some applications of topological data analysis. First, we observe that it is not hard to simulate simplicial maps by inclusion maps but not necessarily in a monotone direction. This, combined with the known algorithms for zigzag persistence, provides an algorithm for computing the persistence induced by simplicial maps. Our main result is that the above simple minded approach can be improved for a sequence of simplicial maps given in a monotone direction. A simplicial map can be decomposed into a set of elementary inclusions and vertex collapses--two atomic operations that can be supported efficiently with the notion of simplex annotations for computing persistent homology. A consistent annotation through these atomic operations implies the maintenance of a consistent cohomology basis, hence a homology basis by duality. While the idea of maintaining a cohomology basis through an inclusion is not new, maintaining them through a vertex collapse is new, which constitutes an important atomic operation for simulating simplicial maps. Annotations support the vertex collapse in addition to the usual inclusion quite naturally. Finally, we exhibit an application of this new tool in which we approximate the persistence diagram of a filtration of Rips complexes where vertex collapses are used to tame the blow-up in size.
The theory of persistence modules is an emerging field of algebraic topology which originated in topological data analysis. In these notes we provide a concise introduction into this field and give an account on some of its interactions with geometry and analysis. In particular, we present applications of persistence to symplectic topology, including the geometry of symplectomorphism groups and embedding problems. Furthermore, we discuss topological function theory which provides a new insight on oscillation of functions. The material should be accessible to readers with a basic background in algebraic and differential topology.
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