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Register a new userBolus arrival time estimation in dynamic contrast-enhanced magnetic resonance imaging of small animals based on spline models
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Dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI) is used to quantify perfusion and vascular permeability. In most cases a bolus arrival time (BAT) delay exists between the arterial input function (AIF) and the contrast agent arrival in the tissue of interest which needs to be estimated. Existing methods for BAT estimation are tailored to tissue concentration curves which have a fast upslope to the peak as frequently observed in patient data. However, they may give poor results for curves that do not have this characteristic shape such as tissue concentration curves of small animals. In this paper, we propose a novel method for BAT estimation of signals that do not have a fast upslope to their peak. The model is based on splines which are able to adapt to a large variety of concentration curves. Furthermore, the method estimates BATs on a continuous time scale. All relevant model parameters are automatically determined by generalized cross validation. We use simulated concentration curves of small animal and patient settings to assess the accuracy and robustness of our approach. The proposed method outperforms a state-of-the-art method for small animal data and it gives competitive results for patient data. Finally, it is tested on in vivo acquired rat data where accuracy of BAT estimation was also improved upon the state-of-the-art method. The results indicate that the proposed method is suitable for accurate BAT estimation of DCE-MRI data, especially for small animals.
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Objective: To develop an automatic image normalization algorithm for intensity correction of images from breast dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI) acquired by different MRI scanners with various imaging parameters, using only image information. Methods: DCE-MR images of 460 subjects with breast cancer acquired by different scanners were used in this study. Each subject had one T1-weighted pre-contrast image and three T1-weighted post-contrast images available. Our normalization algorithm operated under the assumption that the same type of tissue in different patients should be represented by the same voxel value. We used four tissue/material types as the anchors for the normalization: 1) air, 2) fat tissue, 3) dense tissue, and 4) heart. The algorithm proceeded in the following two steps: First, a state-of-the-art deep learning-based algorithm was applied to perform tissue segmentation accurately and efficiently. Then, based on the segmentation results, a subject-specific piecewise linear mapping function was applied between the anchor points to normalize the same type of tissue in different patients into the same intensity ranges. We evaluated the algorithm with 300 subjects used for training and the rest used for testing. Results: The application of our algorithm to images with different scanning parameters resulted in highly improved consistency in pixel values and extracted radiomics features. Conclusion: The proposed image normalization strategy based on tissue segmentation can perform intensity correction fully automatically, without the knowledge of the scanner parameters. Significance: We have thoroughly tested our algorithm and showed that it successfully normalizes the intensity of DCE-MR images. We made our software publicly available for others to apply in their analyses.
Magnetic Resonance Imaging has become nowadays an indispensable tool with applications ranging from medicine to material science. However, so far the physical limits of the maximum achievable experimental contrast were unknown. We introduce an approach based on principles of optimal control theory to explore these physical limits, providing a benchmark for numerically optimized robust pulse sequences which can take into account experimental imperfections. This approach is demonstrated experimentally using a model system of two spatially separated liquids corresponding to blood in its oxygenated and deoxygenated forms.
Acoustic impedance mismatches between soft tissues and bones are known to result in strong aberrations in optoacoustic and ultrasound images. Of particular importance are the severe distortions introduced by the human skull, impeding transcranial brain imaging with these modalities. While modelling of ultrasound propagation through the skull may in principle help correcting for some of the skull-induced aberrations, these approaches are commonly challenged by the highly heterogeneous and dispersive acoustic properties of the skull and lack of exact knowledge on its geometry and internal structure. Here we demonstrate that the spatio-temporal properties of the acoustic distortions induced by the skull are preserved for signal sources generated at neighboring intracranial locations by means of optoacoustic excitation. This optoacoustic memory effect is exploited for building a three-dimensional model accurately describing the generation, propagation and detection of time-resolved broadband optoacoustic waveforms traversing the skull. The memory-based model-based inversion is then shown to accurately recover the optical absorption distribution inside the skull with spatial resolution and image quality comparable to those attained in skull-free medium.
Auxetics refers to structures or materials with a negative Poissons ratio, thereby capable of exhibiting counter-intuitive behaviors. Herein, auxetic structures are exploited to design mechanically tunable metamaterials in both planar and hemispherical configurations operating at megahertz (MHz) frequencies, optimized for their application to magnetic resonance imaging (MRI). Specially, the reported tunable metamaterials are composed of arrays of inter-jointed unit cells featuring metallic helices, enabling auxetic patterns with a negative Poissons ratio. The deployable deformation of the metamaterials yields an added degree of freedom with respect to frequency tunability through the resultant modification of the electromagnetic interactions between unit cells. The metamaterials are fabricated using 3D printing technology and a ~20 MHz frequency shift of the resonance mode is enabled during deformation. Experimental validation is performed in a clinical (3.0 Tesla) MRI, demonstrating that the metamaterials enable a marked boost in radiofrequency (RF) field strength under resonance matched conditions, ultimately yielding a dramatic increase in the signal-to-noise ratio (SNR) (~ 4.5X) of MRI. The tunable metamaterials presented herein offer a novel pathway towards the practical utilization of metamaterials in MRI, as well as a range of other emerging applications.
Over almost five decades of development and improvement, Magnetic Resonance Imaging (MRI) has become a rich and powerful, non-invasive technique in medical imaging, yet not reaching its physical limits. Technical and physiological restrictions constrain physically feasible developments. A common solution to improve imaging speed and resolution is to use higher field strengths, which also has subtle and potentially harmful implications. However, patient safety is to be considered utterly important at all stages of research and clinical routine. Here we show that dynamic metamaterials are a promising solution to expand the potential of MRI and to overcome some limitations. A thin, smart, non-linear metamaterial is presented that enhances the imaging performance and increases the signal-to-noise ratio in 3T MRI significantly (up to eightfold), whilst the transmit field is not affected due to self-detuning and, thus, patient safety is also assured. This self-detuning works without introducing any additional overhead related to MRI-compatible electronic control components or active (de-)tuning mechanisms. The design paradigm, simulation results, on-bench characterization, and MRI experiments using homogeneous and structural phantoms are described. The suggested single-layer metasurface paves the way for conformal and patient-specific manufacturing, which was not possible before due to typically bulky and rigid metamaterial structures.
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