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Register a new userEnd-to-End Diagnosis and Segmentation Learning from Cardiac Magnetic Resonance Imaging
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Added by
Gerard Snaauw
Publication date
2018
fields
Informatics Engineering
and research's language is
English
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Cardiac magnetic resonance (CMR) is used extensively in the diagnosis and management of cardiovascular disease. Deep learning methods have proven to deliver segmentation results comparable to human experts in CMR imaging, but there have been no convincing results for the problem of end-to-end segmentation and diagnosis from CMR. This is in part due to a lack of sufficiently large datasets required to train robust diagnosis models. In this paper, we propose a learning method to train diagnosis models, where our approach is designed to work with relatively small datasets. In particular, the optimisation loss is based on multi-task learning that jointly trains for the tasks of segmentation and diagnosis classification. We hypothesize that segmentation has a regularizing effect on the learning of features relevant for diagnosis. Using the 100 training and 50 testing samples available from the Automated Cardiac Diagnosis Challenge (ACDC) dataset, which has a balanced distribution of 5 cardiac diagnoses, we observe a reduction of the classification error from 32% to 22%, and a faster convergence compared to a baseline without segmentation. To the best of our knowledge, this is the best diagnosis results from CMR using an end-to-end diagnosis and segmentation learning method.
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Many of the recent successful methods for video object segmentation (VOS) are overly complicated, heavily rely on fine-tuning on the first frame, and/or are slow, and are hence of limited practical use. In this work, we propose FEELVOS as a simple and fast method which does not rely on fine-tuning. In order to segment a video, for each frame FEELVOS uses a semantic pixel-wise embedding together with a global and a local matching mechanism to transfer information from the first frame and from the previous frame of the video to the current frame. In contrast to previous work, our embedding is only used as an internal guidance of a convolutional network. Our novel dynamic segmentation head allows us to train the network, including the embedding, end-to-end for the multiple object segmentation task with a cross entropy loss. We achieve a new state of the art in video object segmentation without fine-tuning with a J&F measure of 71.5% on the DAVIS 2017 validation set. We make our code and models available at https://github.com/tensorflow/models/tree/master/research/feelvos.
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End-to-end paradigms significantly improve the accuracy of various deep-learning-based computer vision models. To this end, tasks like object detection have been upgraded by replacing non-end-to-end components, such as removing non-maximum suppression by training with a set loss based on bipartite matching. However, such an upgrade is not applicable to instance segmentation, due to its significantly higher output dimensions compared to object detection. In this paper, we propose an instance segmentation Transformer, termed ISTR, which is the first end-to-end framework of its kind. ISTR predicts low-dimensional mask embeddings, and matches them with ground truth mask embeddings for the set loss. Besides, ISTR concurrently conducts detection and segmentation with a recurrent refinement strategy, which provides a new way to achieve instance segmentation compared to the existing top-down and bottom-up frameworks. Benefiting from the proposed end-to-end mechanism, ISTR demonstrates state-of-the-art performance even with approximation-based suboptimal embeddings. Specifically, ISTR obtains a 46.8/38.6 box/mask AP using ResNet50-FPN, and a 48.1/39.9 box/mask AP using ResNet101-FPN, on the MS COCO dataset. Quantitative and qualitative results reveal the promising potential of ISTR as a solid baseline for instance-level recognition. Code has been made available at: https://github.com/hujiecpp/ISTR.
We propose a novel method for semantic segmentation, the task of labeling each pixel in an image with a semantic class. Our method combines the advantages of the two main competing paradigms. Methods based on region classification offer proper spatial support for appearance measurements, but typically operate in two separate stages, none of which targets pixel labeling performance at the end of the pipeline. More recent fully convolutional methods are capable of end-to-end training for the final pixel labeling, but resort to fixed patches as spatial support. We show how to modify modern region-based approaches to enable end-to-end training for semantic segmentation. This is achieved via a differentiable region-to-pixel layer and a differentiable free-form Region-of-Interest pooling layer. Our method improves the state-of-the-art in terms of class-average accuracy with 64.0% on SIFT Flow and 49.9% on PASCAL Context, and is particularly accurate at object boundaries.
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