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Register a new userA Generative Adversarial Model for Right Ventricle Segmentation
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Nicolo' Savioli
Publication date
2018
fields
Informatics Engineering
and research's language is
English
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The clinical management of several cardiovascular conditions, such as pulmonary hypertension, require the assessment of the right ventricular (RV) function. This work addresses the fully automatic and robust access to one of the key RV biomarkers, its ejection fraction, from the gold standard imaging modality, MRI. The problem becomes the accurate segmentation of the RV blood pool from cine MRI sequences. This work proposes a solution based on Fully Convolutional Neural Networks (FCNN), where our first contribution is the optimal combination of three concepts (the convolution Gated Recurrent Units (GRU), the Generative Adversarial Networks (GAN), and the L1 loss function) that achieves an improvement of 0.05 and 3.49 mm in Dice Index and Hausdorff Distance respectively with respect to the baseline FCNN. This improvement is then doubled by our second contribution, the ROI-GAN, that sets two GANs to cooperate working at two fields of view of the image, its full resolution and the region of interest (ROI). Our rationale here is to better guide the FCNN learning by combining global (full resolution) and local Region Of Interest (ROI) features. The study is conducted in a large in-house dataset of $sim$ 23.000 segmented MRI slices, and its generality is verified in a publicly available dataset.
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Retinal vessel segmentation is an indispensable step for automatic detection of retinal diseases with fundoscopic images. Though many approaches have been proposed, existing methods tend to miss fine vessels or allow false positives at terminal branches. Let alone under-segmentation, over-segmentation is also problematic when quantitative studies need to measure the precise width of vessels. In this paper, we present a method that generates the precise map of retinal vessels using generative adversarial training. Our methods achieve dice coefficient of 0.829 on DRIVE dataset and 0.834 on STARE dataset which is the state-of-the-art performance on both datasets.
Magnetic resonance image (MRI) reconstruction is a severely ill-posed linear inverse task demanding time and resource intensive computations that can substantially trade off {it accuracy} for {it speed} in real-time imaging. In addition, state-of-the-art compressed sensing (CS) analytics are not cognizant of the image {it diagnostic quality}. To cope with these challenges we put forth a novel CS framework that permeates benefits from generative adversarial networks (GAN) to train a (low-dimensional) manifold of diagnostic-quality MR images from historical patients. Leveraging a mixture of least-squares (LS) GANs and pixel-wise $ell_1$ cost, a deep residual network with skip connections is trained as the generator that learns to remove the {it aliasing} artifacts by projecting onto the manifold. LSGAN learns the texture details, while $ell_1$ controls the high-frequency noise. A multilayer convolutional neural network is then jointly trained based on diagnostic quality images to discriminate the projection quality. The test phase performs feed-forward propagation over the generator network that demands a very low computational overhead. Extensive evaluations are performed on a large contrast-enhanced MR dataset of pediatric patients. In particular, images rated based on expert radiologists corroborate that GANCS retrieves high contrast images with detailed texture relative to conventional CS, and pixel-wise schemes. In addition, it offers reconstruction under a few milliseconds, two orders of magnitude faster than state-of-the-art CS-MRI schemes.
Semantic segmentation of satellite imagery is a common approach to identify patterns and detect changes around the planet. Most of the state-of-the-art semantic segmentation models are trained in a fully supervised way using Convolutional Neural Network (CNN). The generalization property of CNN is poor for satellite imagery because the data can be very diverse in terms of landscape types, image resolutions, and scarcity of labels for different geographies and seasons. Hence, the performance of CNN doesnt translate well to images from unseen regions or seasons. Inspired by Conditional Generative Adversarial Networks (CGAN) based approach of image-to-image translation for high-resolution satellite imagery, we propose a CGAN framework for land cover classification using medium-resolution Sentinel-2 imagery. We find that the CGAN model outperforms the CNN model of similar complexity by a significant margin on an unseen imbalanced test dataset.
In this article, we propose an approach that can make use of not only labeled EEG signals but also the unlabeled ones which is more accessible. We also suggest the use of data fusion to further improve the seizure prediction accuracy. Data fusion in our vision includes EEG signals, cardiogram signals, body temperature and time. We use the short-time Fourier transform on 28-s EEG windows as a pre-processing step. A generative adversarial network (GAN) is trained in an unsupervised manner where information of seizure onset is disregarded. The trained Discriminator of the GAN is then used as feature extractor. Features generated by the feature extractor are classified by two fully-connected layers (can be replaced by any classifier) for the labeled EEG signals. This semi-supervised seizure prediction method achieves area under the operating characteristic curve (AUC) of 77.68% and 75.47% for the CHBMIT scalp EEG dataset and the Freiburg Hospital intracranial EEG dataset, respectively. Unsupervised training without the need of labeling is important because not only it can be performed in real-time during EEG signal recording, but also it does not require feature engineering effort for each patient.
While most existing segmentation methods usually combined the powerful feature extraction capabilities of CNNs with Conditional Random Fields (CRFs) post-processing, the result always limited by the fault of CRFs . Due to the notoriously slow calculation speeds and poor efficiency of CRFs, in recent years, CRFs post-processing has been gradually eliminated. In this paper, an improved Generative Adversarial Networks (GANs) for image semantic segmentation task (semantic segmentation by GANs, Seg-GAN) is proposed to facilitate further segmentation research. In addition, we introduce Convolutional CRFs (ConvCRFs) as an effective improvement solution for the image semantic segmentation task. Towards the goal of differentiating the segmentation results from the ground truth distribution and improving the details of the output images, the proposed discriminator network is specially designed in a full convolutional manner combined with cascaded ConvCRFs. Besides, the adversarial loss aggressively encourages the output image to be close to the distribution of the ground truth. Our method not only learns an end-to-end mapping from input image to corresponding output image, but also learns a loss function to train this mapping. The experiments show that our method achieves better performance than state-of-the-art methods.
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