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Deep semi-supervised segmentation with weight-averaged consistency targets

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 Publication date 2018
and research's language is English




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Recently proposed techniques for semi-supervised learning such as Temporal Ensembling and Mean Teacher have achieved state-of-the-art results in many important classification benchmarks. In this work, we expand the Mean Teacher approach to segmentation tasks and show that it can bring important improvements in a realistic small data regime using a publicly available multi-center dataset from the Magnetic Resonance Imaging (MRI) domain. We also devise a method to solve the problems that arise when using traditional data augmentation strategies for segmentation tasks on our new training scheme.



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Semi-supervised learning has attracted great attention in the field of machine learning, especially for medical image segmentation tasks, since it alleviates the heavy burden of collecting abundant densely annotated data for training. However, most of existing methods underestimate the importance of challenging regions (e.g. small branches or blurred edges) during training. We believe that these unlabeled regions may contain more crucial information to minimize the uncertainty prediction for the model and should be emphasized in the training process. Therefore, in this paper, we propose a novel Mutual Consistency Network (MC-Net) for semi-supervised left atrium segmentation from 3D MR images. Particularly, our MC-Net consists of one encoder and two slightly different decoders, and the prediction discrepancies of two decoders are transformed as an unsupervised loss by our designed cycled pseudo label scheme to encourage mutual consistency. Such mutual consistency encourages the two decoders to have consistent and low-entropy predictions and enables the model to gradually capture generalized features from these unlabeled challenging regions. We evaluate our MC-Net on the public Left Atrium (LA) database and it obtains impressive performance gains by exploiting the unlabeled data effectively. Our MC-Net outperforms six recent semi-supervised methods for left atrium segmentation, and sets the new state-of-the-art performance on the LA database.
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Semantic segmentation has made tremendous progress in recent years. However, satisfying performance highly depends on a large number of pixel-level annotations. Therefore, in this paper, we focus on the semi-supervised segmentation problem where only a small set of labeled data is provided with a much larger collection of totally unlabeled images. Nevertheless, due to the limited annotations, models may overly rely on the contexts available in the training data, which causes poor generalization to the scenes unseen before. A preferred high-level representation should capture the contextual information while not losing self-awareness. Therefore, we propose to maintain the context-aware consistency between features of the same identity but with different contexts, making the representations robust to the varying environments. Moreover, we present the Directional Contrastive Loss (DC Loss) to accomplish the consistency in a pixel-to-pixel manner, only requiring the feature with lower quality to be aligned towards its counterpart. In addition, to avoid the false-negative samples and filter the uncertain positive samples, we put forward two sampling strategies. Extensive experiments show that our simple yet effective method surpasses current state-of-the-art methods by a large margin and also generalizes well with extra image-level annotations.
Consistency training, which exploits both supervised and unsupervised learning with different augmentations on image, is an effective method of utilizing unlabeled data in semi-supervised learning (SSL) manner. Here, we present another version of the method with Grad-CAM consistency loss, so it can be utilized in training model with better generalization and adjustability. We show that our method improved the baseline ResNet model with at most 1.44 % and 0.31 $pm$ 0.59 %p accuracy improvement on average with CIFAR-10 dataset. We conducted ablation study comparing to using only psuedo-label for consistency training. Also, we argue that our method can adjust in different environments when targeted to different units in the model. The code is available: https://github.com/gimme1dollar/gradcam-consistency-semi-sup.
Deep learning has achieved promising segmentation performance on 3D left atrium MR images. However, annotations for segmentation tasks are expensive, costly and difficult to obtain. In this paper, we introduce a novel hierarchical consistency regularized mean teacher framework for 3D left atrium segmentation. In each iteration, the student model is optimized by multi-scale deep supervision and hierarchical consistency regularization, concurrently. Extensive experiments have shown that our method achieves competitive performance as compared with full annotation, outperforming other state-of-the-art semi-supervised segmentation methods.
Segmentation stands at the forefront of many high-level vision tasks. In this study, we focus on segmenting finger bones within a newly introduced semi-supervised self-taught deep learning framework which consists of a student network and a stand-alone teacher module. The whole system is boosted in a life-long learning manner wherein each step the teacher module provides a refinement for the student network to learn with newly unlabeled data. Experimental results demonstrate the superiority of the proposed method over conventional supervised deep learning methods.
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