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Register a new userLabel-aware Double Transfer Learning for Cross-Specialty Medical Named Entity Recognition
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Added by
Zhenghui Wang
Publication date
2018
fields
Informatics Engineering
and research's language is
English
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We study the problem of named entity recognition (NER) from electronic medical records, which is one of the most fundamental and critical problems for medical text mining. Medical records which are written by clinicians from different specialties usually contain quite different terminologies and writing styles. The difference of specialties and the cost of human annotation makes it particularly difficult to train a universal medical NER system. In this paper, we propose a label-aware double transfer learning framework (La-DTL) for cross-specialty NER, so that a medical NER system designed for one specialty could be conveniently applied to another one with minimal annotation efforts. The transferability is guaranteed by two components: (i) we propose label-aware MMD for feature representation transfer, and (ii) we perform parameter transfer with a theoretical upper bound which is also label aware. We conduct extensive experiments on 12 cross-specialty NER tasks. The experimental results demonstrate that La-DTL provides consistent accuracy improvement over strong baselines. Besides, the promising experimental results on non-medical NER scenarios indicate that La-DTL is potential to be seamlessly adapted to a wide range of NER tasks.
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Cross-domain named entity recognition (NER) models are able to cope with the scarcity issue of NER samples in target domains. However, most of the existing NER benchmarks lack domain-specialized entity types or do not focus on a certain domain, leading to a less effective cross-domain evaluation. To address these obstacles, we introduce a cross-domain NER dataset (CrossNER), a fully-labeled collection of NER data spanning over five diverse domains with specialized entity categories for different domains. Additionally, we also provide a domain-related corpus since using it to continue pre-training language models (domain-adaptive pre-training) is effective for the domain adaptation. We then conduct comprehensive experiments to explore the effectiveness of leveraging different levels of the domain corpus and pre-training strategies to do domain-adaptive pre-training for the cross-domain task. Results show that focusing on the fractional corpus containing domain-specialized entities and utilizing a more challenging pre-training strategy in domain-adaptive pre-training are beneficial for the NER domain adaptation, and our proposed method can consistently outperform existing cross-domain NER baselines. Nevertheless, experiments also illustrate the challenge of this cross-domain NER task. We hope that our dataset and baselines will catalyze research in the NER domain adaptation area. The code and data are available at https://github.com/zliucr/CrossNER.
Named entity recognition (NER) is a fundamental component in many applications, such as Web Search and Voice Assistants. Although deep neural networks greatly improve the performance of NER, due to the requirement of large amounts of training data, deep neural networks can hardly scale out to many languages in an industry setting. To tackle this challenge, cross-lingual NER transfers knowledge from a rich-resource language to languages with low resources through pre-trained multilingual language models. Instead of using training data in target languages, cross-lingual NER has to rely on only training data in source languages, and optionally adds the translated training data derived from source languages. However, the existing cross-lingual NER methods do not make good use of rich unlabeled data in target languages, which is relatively easy to collect in industry applications. To address the opportunities and challenges, in this paper we describe our novel practice in Microsoft to leverage such large amounts of unlabeled data in target languages in real production settings. To effectively extract weak supervision signals from the unlabeled data, we develop a novel approach based on the ideas of semi-supervised learning and reinforcement learning. The empirical study on three benchmark data sets verifies that our approach establishes the new state-of-the-art performance with clear edges. Now, the NER techniques reported in this paper are on their way to become a fundamental component for Web ranking, Entity Pane, Answers Triggering, and Question Answering in the Microsoft Bing search engine. Moreover, our techniques will also serve as part of the Spoken Language Understanding module for a commercial voice assistant. We plan to open source the code of the prototype framework after deployment.
Medical named entity recognition (NER) has wide applications in intelligent healthcare. Sufficient labeled data is critical for training accurate medical NER model. However, the labeled data in a single medical platform is usually limited. Although labeled datasets may exist in many different medical platforms, they cannot be directly shared since medical data is highly privacy-sensitive. In this paper, we propose a privacy-preserving medical NER method based on federated learning, which can leverage the labeled data in different platforms to boost the training of medical NER model and remove the need of exchanging raw data among different platforms. Since the labeled data in different platforms usually has some differences in entity type and annotation criteria, instead of constraining different platforms to share the same model, we decompose the medical NER model in each platform into a shared module and a private module. The private module is used to capture the characteristics of the local data in each platform, and is updated using local labeled data. The shared module is learned across different medical platform to capture the shared NER knowledge. Its local gradients from different platforms are aggregated to update the global shared module, which is further delivered to each platform to update their local shared modules. Experiments on three publicly available datasets validate the effectiveness of our method.
Current work in named entity recognition (NER) shows that data augmentation techniques can produce more robust models. However, most existing techniques focus on augmenting in-domain data in low-resource scenarios where annotated data is quite limited. In contrast, we study cross-domain data augmentation for the NER task. We investigate the possibility of leveraging data from high-resource domains by projecting it into the low-resource domains. Specifically, we propose a novel neural architecture to transform the data representation from a high-resource to a low-resource domain by learning the patterns (e.g. style, noise, abbreviations, etc.) in the text that differentiate them and a shared feature space where both domains are aligned. We experiment with diverse datasets and show that transforming the data to the low-resource domain representation achieves significant improvements over only using data from high-resource domains.
Recently, word enhancement has become very popular for Chinese Named Entity Recognition (NER), reducing segmentation errors and increasing the semantic and boundary information of Chinese words. However, these methods tend to ignore the information of the Chinese character structure after integrating the lexical information. Chinese characters have evolved from pictographs since ancient times, and their structure often reflects more information about the characters. This paper presents a novel Multi-metadata Embedding based Cross-Transformer (MECT) to improve the performance of Chinese NER by fusing the structural information of Chinese characters. Specifically, we use multi-metadata embedding in a two-stream Transformer to integrate Chinese character features with the radical-level embedding. With the structural characteristics of Chinese characters, MECT can better capture the semantic information of Chinese characters for NER. The experimental results obtained on several well-known benchmarking datasets demonstrate the merits and superiority of the proposed MECT method.footnote{The source code of the proposed method is publicly available at https://github.com/CoderMusou/MECT4CNER.
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