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Register a new userIncreasing Parallelism in the ROOT I/O Subsystem
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Added by
Zhe Zhang
Publication date
2018
fields
Informatics Engineering
and research's language is
English
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When processing large amounts of data, the rate at which reading and writing can take place is a critical factor. High energy physics data processing relying on ROOT is no exception. The recent parallelisation of LHC experiments software frameworks and the analysis of the ever increasing amount of collision data collected by experiments further emphasized this issue underlying the need of increasing the implicit parallelism expressed within the ROOT I/O. In this contribution we highlight the improvements of the ROOT I/O subsystem which targeted a satisfactory scaling behaviour in a multithreaded context. The effect of parallelism on the individual steps which are chained by ROOT to read and write data, namely (de)compression, (de)serialisation, access to storage backend, are discussed. Performance measurements are discussed through real life examples coming from CMS production workflows on traditional server platforms and highly parallel architectures such as Intel Xeon Phi.
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The ROOT TTree data format encodes hundreds of petabytes of High Energy and Nuclear Physics events. Its columnar layout drives rapid analyses, as only those parts (branches) that are really used in a given analysis need to be read from storage. Its unique feature is the seamless C++ integration, which allows users to directly store their event classes without explicitly defining data schemas. In this contribution, we present the status and plans of the future ROOT 7 event I/O. Along with the ROOT 7 interface modernization, we aim for robust, where possible compile-time safe C++ interfaces to read and write event data. On the performance side, we show first benchmarks using ROOTs new experimental I/O subsystem that combines the best of TTrees with recent advances in columnar data formats. A core ingredient is a strong separation of the high-level logical data layout (C++ classes) from the low-level physical data layout (storage backed nested vectors of simple types). We show how the new, optimized physical data layout speeds up serialization and deserialization and facilitates parallel, vectorized and bulk operations. This lets ROOT I/O run optimally on the upcoming ultra-fast NVRAM storage devices, as well as file-less storage systems such as object stores.
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