In this article, a novel description of the hypergeometric differential equation found from Gelfand-Kapranov-Zelevinskys system (referred to GKZ equation) for Giventals $J$-function in the Gromov-Witten theory will be proposed. The GKZ equation involves a parameter $hbar$, and we will reconstruct it as the WKB expansion from the classical limit $hbarto 0$ via the topological recursion. In this analysis, the spectral curve (referred to GKZ curve) plays a central role, and it can be defined as the critical point set of the mirror Landau-Ginzburg potential. Our novel description is derived via the duality relations of the string theories, and various physical interpretations suggest that the GKZ equation is identified with the quantum curve for the brane partition function in the cohomological limit. As an application of our novel picture for the GKZ equation, we will discuss the Stokes matrix for the equivariant $mathbb{C}textbf{P}^{1}$ model and the wall-crossing formula for the total Stokes matrix will be examined. And as a byproduct of this analysis we will study Dubrovins conjecture for this equivariant model.
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