No Arabic abstract
Multisplit is a broadly useful parallel primitive that permutes its input data into contiguous buckets or bins, where the function that categorizes an element into a bucket is provided by the programmer. Due to the lack of an efficient multisplit on GPUs, programmers often choose to implement multisplit with a sort. One way is to first generate an auxiliary array of bucket IDs and then sort input data based on it. In case smaller indexed buckets possess smaller valued keys, another way for multisplit is to directly sort input data. Both methods are inefficient and require more work than necessary: the former requires more expensive data movements while the latter spends unnecessary effort in sorting elements within each bucket. In this work, we provide a parallel model and multiple implementations for the multisplit problem. Our principal focus is multisplit for a small (up to 256) number of buckets. We use warp-synchronous programming models and emphasize warp-wide communications to avoid branch divergence and reduce memory usage. We also hierarchically reorder input elements to achieve better coalescing of global memory accesses. On a GeForce GTX 1080 GPU, we can reach a peak throughput of 18.93 Gkeys/s (or 11.68 Gpairs/s) for a key-only (or key-value) multisplit. Finally, we demonstrate how multisplit can be used as a building block for radix sort. In our multisplit-based sort implementation, we achieve comparable performance to the fastest GPU sort routines, sorting 32-bit keys (and key-value pairs) with a throughput of 3.0 G keys/s (and 2.1 Gpair/s).
Fast domain propagation of linear constraints has become a crucial component of todays best algorithms and solvers for mixed integer programming and pseudo-boolean optimization to achieve peak solving performance. Irregularities in the form of dynamic algorithmic behaviour, dependency structures, and sparsity patterns in the input data make efficient implementations of domain propagation on GPUs and, more generally, on parallel architectures challenging. This is one of the main reasons why domain propagation in state-of-the-art solvers is single thread only. In this paper, we present a new algorithm for domain propagation which (a) avoids these problems and allows for an efficient implementation on GPUs, and is (b) capable of running propagation rounds entirely on the GPU, without any need for synchronization or communication with the CPU. We present extensive computational results which demonstrate the effectiveness of our approach and show that ample speedups are possible on practically relevant problems: on state-of-the-art GPUs, our geometric mean speed-up for reasonably-large instances is around 10x to 20x and can be as high as 180x on favorably-large instances.
We propose a parallel graph-based data clustering algorithm using CUDA GPU, based on exact clustering of the minimum spanning tree in terms of a minimum isoperimetric criteria. We also provide a comparative performance analysis of our algorithm with other related ones which demonstrates the general superiority of this parallel algorithm over other competing algorithms in terms of accuracy and speed.
This paper describes a massively parallel code for a state-of-the art thermal lattice- Boltzmann method. Our code has been carefully optimized for performance on one GPU and to have a good scaling behavior extending to a large number of GPUs. Versions of this code have been already used for large-scale studies of convective turbulence. GPUs are becoming increasingly popular in HPC applications, as they are able to deliver higher performance than traditional processors. Writing efficient programs for large clusters is not an easy task as codes must adapt to increasingly parallel architectures, and the overheads of node-to-node communications must be properly handled. We describe the structure of our code, discussing several key design choices that were guided by theoretical models of performance and experimental benchmarks. We present an extensive set of performance measurements and identify the corresponding main bot- tlenecks; finally we compare the results of our GPU code with those measured on other currently available high performance processors. Our results are a production-grade code able to deliver a sustained performance of several tens of Tflops as well as a design and op- timization methodology that can be used for the development of other high performance applications for computational physics.
Graphics Processing Unit (GPU) computing is becoming an alternate computing platform for numerical simulations. However, it is not clear which numerical scheme will provide the highest computational efficiency for different types of problems. To this end, numerical accuracies and computational work of several numerical methods are compared using a GPU computing implementation. The Correction Procedure via Reconstruction (CPR), Discontinuous Galerkin (DG), Nodal Discontinuous Galerkin (NDG), Spectral Difference (SD), and Finite Volume (FV) methods are investigated using various reconstruction orders. Both smooth and discontinuous cases are considered for two-dimensional simulations. For discontinuous problems, MUSCL schemes are employed with FV, while CPR, DG, NDG, and SD use slope limiting. The computation time to reach a set error criteria and total time to complete solutions are compared across the methods. It is shown that while FV methods can produce solutions with low computational times, they produce larger errors than high-order methods for smooth problems at the same order of accuracy. For discontinuous problems, the methods show good agreement with one another in terms of solution profiles, and the total computational times between FV, CPR, and SD are comparable.
We implement exact triangle counting in graphs on the GPU using three different methodologies: subgraph matching to a triangle pattern; programmable graph analytics, with a set-intersection approach; and a matrix formulation based on sparse matrix-matrix multiplies. All three deliver best-of-class performance over CPU implementations and over comparable GPU implementations, with the graph-analytic approach achieving the best performance due to its ability to exploit efficient filtering steps to remove unnecessary work and its high-performance set-intersection core.