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Register a new userFast methods for training Gaussian processes on large data sets
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Added by
Alvin Chua
Publication date
2016
fields
Mathematical Statistics
and research's language is
English
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Gaussian process regression (GPR) is a non-parametric Bayesian technique for interpolating or fitting data. The main barrier to further uptake of this powerful tool rests in the computational costs associated with the matrices which arise when dealing with large data sets. Here, we derive some simple results which we have found useful for speeding up the learning stage in the GPR algorithm, and especially for performing Bayesian model comparison between different covariance functions. We apply our techniques to both synthetic and real data and quantify the speed-up relative to using nested sampling to numerically evaluate model evidences.
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In this paper we analyze approximate methods for undertaking a principal components analysis (PCA) on large data sets. PCA is a classical dimension reduction method that involves the projection of the data onto the subspace spanned by the leading eigenvectors of the covariance matrix. This projection can be used either for exploratory purposes or as an input for further analysis, e.g. regression. If the data have billions of entries or more, the computational and storage requirements for saving and manipulating the design matrix in fast memory is prohibitive. Recently, the Nystrom and column-sampling methods have appeared in the numerical linear algebra community for the randomized approximation of the singular value decomposition of large matrices. However, their utility for statistical applications remains unclear. We compare these approximations theoretically by bounding the distance between the induced subspaces and the desired, but computationally infeasible, PCA subspace. Additionally we show empirically, through simulations and a real data example involving a corpus of emails, the trade-off of approximation accuracy and computational complexity.
A model involving Gaussian processes (GPs) is introduced to simultaneously handle multi-task learning, clustering, and prediction for multiple functional data. This procedure acts as a model-based clustering method for functional data as well as a learning step for subsequent predictions for new tasks. The model is instantiated as a mixture of multi-task GPs with common mean processes. A variational EM algorithm is derived for dealing with the optimisation of the hyper-parameters along with the hyper-posteriors estimation of latent variables and processes. We establish explicit formulas for integrating the mean processes and the latent clustering variables within a predictive distribution, accounting for uncertainty on both aspects. This distribution is defined as a mixture of cluster-specific GP predictions, which enhances the performances when dealing with group-structured data. The model handles irregular grid of observations and offers different hypotheses on the covariance structure for sharing additional information across tasks. The performances on both clustering and prediction tasks are assessed through various simulated scenarios and real datasets. The overall algorithm, called MagmaClust, is publicly available as an R package.
The EM algorithm is one of the most popular algorithm for inference in latent data models. The original formulation of the EM algorithm does not scale to large data set, because the whole data set is required at each iteration of the algorithm. To alleviate this problem, Neal and Hinton have proposed an incremental version of the EM (iEM) in which at each iteration the conditional expectation of the latent data (E-step) is updated only for a mini-batch of observations. Another approach has been proposed by Cappe and Moulines in which the E-step is replaced by a stochastic approximation step, closely related to stochastic gradient. In this paper, we analyze incremental and stochastic version of the EM algorithm as well as the variance reduced-version of Chen et. al. in a common unifying framework. We also introduce a new version incremental version, inspired by the SAGA algorithm by Defazio et. al. We establish non-asymptotic convergence bounds for global convergence. Numerical applications are presented in this article to illustrate our findings.
Generalized Gaussian processes (GGPs) are highly flexible models that combine latent GPs with potentially non-Gaussian likelihoods from the exponential family. GGPs can be used in a variety of settings, including GP classification, nonparametric count regression, modeling non-Gaussian spatial data, and analyzing point patterns. However, inference for GGPs can be analytically intractable, and large datasets pose computational challenges due to the inversion of the GP covariance matrix. We propose a Vecchia-Laplace approximation for GGPs, which combines a Laplace approximation to the non-Gaussian likelihood with a computationally efficient Vecchia approximation to the GP, resulting in a simple, general, scalable, and accurate methodology. We provide numerical studies and comparisons on simulated and real spatial data. Our methods are implemented in a freely available R package.
The data association problem is concerned with separating data coming from different generating processes, for example when data come from different data sources, contain significant noise, or exhibit multimodality. We present a fully Bayesian approach to this problem. Our model is capable of simultaneously solving the data association problem and the induced supervised learning problems. Underpinning our approach is the use of Gaussian process priors to encode the structure of both the data and the data associations. We present an efficient learning scheme based on doubly stochastic variational inference and discuss how it can be applied to deep Gaussian process priors.
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