We compare the Baryonic Tully-Fisher relation (BTFR) of simulations and observations of galaxies ranging from dwarfs to spirals, using various measures of rotational velocity Vrot. We explore the BTFR when measuring Vrot at the flat part of the rotation curve, Vflat, at the extent of HI gas, Vlast, and using 20% (W20) and 50% (W50) of the width of HI line profiles. We also compare with the maximum circular velocity of the parent halo, Vmax, within dark matter only simulations. The different BTFRs increasingly diverge as galaxy mass decreases. Using Vlast one obtains a power law over four orders of magnitude in baryonic mass, with slope similar to the observed BTFR. Measuring Vflat gives similar results as Vlast when galaxies with rising rotation curves are excluded. However, higher rotation velocities would be found for low mass galaxies if the cold gas extended far enough for Vrot to reach a maximum. W20 gives a similar slope as Vlast but with slightly lower values of Vrot for low mass galaxies, although this may depend on the extent of the gas in your galaxy sample. W50 bends away from these other relations toward low velocities at low masses. By contrast, Vmax bends toward high velocities for low mass galaxies, as cold gas does not extend out to the radius at which halos reach Vmax. Our study highlights the need for careful comparisons between observations and models: one needs to be consistent about the particular method of measuring Vrot, and precise about the radius at which velocities are measured.