We provide a rigorous treatment of the entanglement properties of two-mode Gaussian states in atmospheric channels by deriving and analyzing the input-output relations for the corresponding entanglement test. A key feature of such turbulent channels is a non-trivial dependence of the transmitted continuous-variable entanglement on coherent displacements of the quantum state of the input field. Remarkably, this allows one to optimize the entanglement certification by modifying local coherent amplitudes using a finite, but optimal amount of squeezing. In addition, we propose a protocol which, in principle, renders it possible to transfer the Gaussian entanglement through any turbulent channel over arbitrary distances. Therefore, our approach provides the theoretical foundation for advanced applications of Gaussian entanglement in free-space quantum communication.