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Register a new userSpatial Semantic Scan: Jointly Detecting Subtle Events and their Spatial Footprint
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Added by
Abhinav Maurya
Publication date
2015
fields
Informatics Engineering
and research's language is
English
Authors
Abhinav Maurya
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Many methods have been proposed for detecting emerging events in text streams using topic modeling. However, these methods have shortcomings that make them unsuitable for rapid detection of locally emerging events on massive text streams. We describe Spatially Compact Semantic Scan (SCSS) that has been developed specifically to overcome the shortcomings of current methods in detecting new spatially compact events in text streams. SCSS employs alternating optimization between using semantic scan to estimate contrastive foreground topics in documents, and discovering spatial neighborhoods with high occurrence of documents containing the foreground topics. We evaluate our method on Emergency Department chief complaints dataset (ED dataset) to verify the effectiveness of our method in detecting real-world disease outbreaks from free-text ED chief complaint data.
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Early detection and precise characterization of emerging topics in text streams can be highly useful in applications such as timely and targeted public health interventions and discovering evolving regional business trends. Many methods have been proposed for detecting emerging events in text streams using topic modeling. However, these methods have numerous shortcomings that make them unsuitable for rapid detection of locally emerging events on massive text streams. In this paper, we describe Semantic Scan (SS) that has been developed specifically to overcome these shortcomings in detecting new spatially compact events in text streams. Semantic Scan integrates novel contrastive topic modeling with online document assignment and principled likelihood ratio-based spatial scanning to identify emerging events with unexpected patterns of keywords hidden in text streams. This enables more timely and accurate detection and characterization of anomalous, spatially localized emerging events. Semantic Scan does not require manual intervention or labeled training data, and is robust to noise in real-world text data since it identifies anomalous text patterns that occur in a cluster of new documents rather than an anomaly in a single new document. We compare Semantic Scan to alternative state-of-the-art methods such as Topics over Time, Online LDA, and Labeled LDA on two real-world tasks: (i) a disease surveillance task monitoring free-text Emergency Department chief complaints in Allegheny County, and (ii) an emerging business trend detection task based on Yelp reviews. On both tasks, we find that Semantic Scan provides significantly better event detection and characterization accuracy than competing approaches, while providing up to an order of magnitude speedup.
In the process of exploring the world, the curiosity constantly drives humans to cognize new things. Supposing you are a zoologist, for a presented animal image, you can recognize it immediately if you know its class. Otherwise, you would more likely attempt to cognize it by exploiting the side-information (e.g., semantic information, etc.) you have accumulated. Inspired by this, this paper decomposes the generalized zero-shot learning (G-ZSL) task into an open set recognition (OSR) task and a zero-shot learning (ZSL) task, where OSR recognizes seen classes (if we have seen (or known) them) and rejects unseen classes (if we have never seen (or known) them before), while ZSL identifies the unseen classes rejected by the former. Simultaneously, without violating OSRs assumptions (only known class knowledge is available in training), we also first attempt to explore a new generalized open set recognition (G-OSR) by introducing the accumulated side-information from known classes to OSR. For G-ZSL, such a decomposition effectively solves the class overfitting problem with easily misclassifying unseen classes as seen classes. The problem is ubiquitous in most existing G-ZSL methods. On the other hand, for G-OSR, introducing such semantic information of known classes not only improves the recognition performance but also endows OSR with the cognitive ability of unknown classes. Specifically, a visual and semantic prototypes-jointly guided convolutional neural network (VSG-CNN) is proposed to fulfill these two tasks (G-ZSL and G-OSR) in a unified end-to-end learning framework. Extensive experiments on benchmark datasets demonstrate the advantages of our learning framework.
A vast amount of textual web streams is influenced by events or phenomena emerging in the real world. The social web forms an excellent modern paradigm, where unstructured user generated content is published on a regular basis and in most occasions is freely distributed. The present Ph.D. Thesis deals with the problem of inferring information - or patterns in general - about events emerging in real life based on the contents of this textual stream. We show that it is possible to extract valuable information about social phenomena, such as an epidemic or even rainfall rates, by automatic analysis of the content published in Social Media, and in particular Twitter, using Statistical Machine Learning methods. An important intermediate task regards the formation and identification of features which characterise a target event; we select and use those textual features in several linear, non-linear and hybrid inference approaches achieving a significantly good performance in terms of the applied loss function. By examining further this rich data set, we also propose methods for extracting various types of mood signals revealing how affective norms - at least within the social webs population - evolve during the day and how significant events emerging in the real world are influencing them. Lastly, we present some preliminary findings showing several spatiotemporal characteristics of this textual information as well as the potential of using it to tackle tasks such as the prediction of voting intentions.
Deep neural networks (DNNs) have been shown to be vulnerable against adversarial examples (AEs), which are maliciously designed to cause dramatic model output errors. In this work, we reveal that normal examples (NEs) are insensitive to the fluctuations occurring at the highly-curved region of the decision boundary, while AEs typically designed over one single domain (mostly spatial domain) exhibit exorbitant sensitivity on such fluctuations. This phenomenon motivates us to design another classifier (called dual classifier) with transformed decision boundary, which can be collaboratively used with the original classifier (called primal classifier) to detect AEs, by virtue of the sensitivity inconsistency. When comparing with the state-of-the-art algorithms based on Local Intrinsic Dimensionality (LID), Mahalanobis Distance (MD), and Feature Squeezing (FS), our proposed Sensitivity Inconsistency Detector (SID) achieves improved AE detection performance and superior generalization capabilities, especially in the challenging cases where the adversarial perturbation levels are small. Intensive experimental results on ResNet and VGG validate the superiority of the proposed SID.
The National Institutes of Healths (NIH) Human Biomolecular Atlas Program (HuBMAP) aims to create a comprehensive high-resolution atlas of all the cells in the healthy human body. Multiple laboratories across the United States are collecting tissue specimens from different organs of donors who vary in sex, age, and body size. Integrating and harmonizing the data derived from these samples and mapping them into a common three-dimensional (3D) space is a major challenge. The key to making this possible is a Common Coordinate Framework (CCF), which provides a semantically annotated, 3D reference system for the entire body. The CCF enables contributors to HuBMAP to register specimens and datasets within a common spatial reference system, and it supports a standardized way to query and explore data in a spatially and semantically explicit manner. [...] This paper describes the construction and usage of a CCF for the human body and its reference implementation in HuBMAP. The CCF consists of (1) a CCF Clinical Ontology, which provides metadata about the specimen and donor (the who); (2) a CCF Semantic Ontology, which describes what part of the body a sample came from and details anatomical structures, cell types, and biomarkers (ASCT+B); and (3) a CCF Spatial Ontology, which indicates where a tissue sample is located in a 3D coordinate system. An initial version of all three CCF ontologies has been implemented for the first HuBMAP Portal release. It was successfully used by Tissue Mapping Centers to semantically annotate and spatially register 48 kidney and spleen tissue blocks. The blocks can be queried and explored in their clinical, semantic, and spatial context via the CCF user interface in the HuBMAP Portal.
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