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Register a new userLight-induced self-assembly of active rectification devices
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Self-propelled colloidal objects, such as motile bacteria or synthetic microswimmers, have microscopically irreversible individual dynamics - a feature they share with all living systems. The incoherent behaviour of individual swimmers can then be harnessed (or rectified) by microfluidic devices that create systematic motions impossible in equilibrium. Examples include flow of rotor particles round a circuit, steady rotation of a gear wheel in a bacterial bath, and pumping of bacteria between chambers by funnel gates. Here we present a computational proof-of-concept study, showing that such active rectification devices might be created directly from an unstructured primordial soup of motile particles, solely by using spatially modulated illumination to control their local propulsion speed. Alongside both microscopic irreversibility and speed modulation, our mechanism requires spatial symmetry breaking, such as a chevron light pattern, and strong interactions between particles, such as volume exclusion causing a collisional slow-down at high density. These four factors create a many-body rectification mechanism that generically differs from one-body microfluidic antecedents. Our work suggests that standard spatial-light-modulator technology might allow the programmable, light-induced self-assembly of active rectification devices from an unstructured particle bath.
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We investigate the phase behavior and kinetics of a monodisperse mixture of active (textit{i.e.}, self-propelled) and passive isometric Brownian particles through Brownian dynamics simulations and theory. As in a purely active system, motility of the active component triggers phase separation into a dense and a dilute phase; in the dense phase we further find active-passive segregation, with rafts of passive particles in a sea of active particles. We find that phase separation from an initially disordered mixture can occur with as little as 15 percent of the particles being active. Finally, we show that a system prepared in a suitable fully segregated initial state reproducibly self-assembles an active corona which triggers crystallization of the passive core by initiating a compression wave. Our findings are relevant to the experimental pursuit of directed self-assembly using active particles.
Study on a rectified current induced by active particles has received a great attention due to its possible application to a microscopic motor in biological environments. Insertion of an {em asymmetric} passive object amid many active particles has been regarded as an essential ingredient for generating such a rectified motion. Here, we report that the reverse situation is also possible, where the motion of an active object can be rectified by its geometric asymmetry amid many passive particles. This may describe an unidirectional motion of polar biological agents with asymmetric shape. We also find a weak but less diffusive rectified motion in a {em passive} mode without energy pump-in. This moving by dissipation mechanism could be used as a design principle for developing more reliable microscopic motors.
We study DNA self-assembly and DNA computation using a coarse-grained DNA model within the directional dynamic bonding framework {[}C. Svaneborg, Comp. Phys. Comm. 183, 1793 (2012){]}. In our model, a single nucleotide or domain is represented by a single interaction site. Complementary sites can reversibly hybridize and dehybridize during a simulation. This bond dynamics induces a dynamics of the angular and dihedral bonds, that model the collective effects of chemical structure on the hybridization dynamics. We use the DNA model to perform simulations of the self-assembly kinetics of DNA tetrahedra, an icosahedron, as well as strand displacement operations used in DNA computation.
Using computer simulations and dynamic mean-field theory, we demonstrate that fast enough rotation of circle active Brownian particles in two dimensions generates a dynamical clustering state interrupting the conventional motility induced phase separation (MIPS). Multiple clusters arise from the combination of the conventional MIPS cohesion, and the circulating current caused disintegration. The non-vanishing current in non-equilibrium steady states microscopically originates from the motility ``relieved by automatic rotation, which breaks the detailed balance at the continuum level. This mechanism sheds light on the understanding of dynamic clusters formation observed in a variety of active matter systems, and may help examine the generalization of effective thermodynamic concepts developed in the context of MIPS.
Controlling the topology of structures self-assembled from a set of heterogeneous building blocks is highly desirable for many applications, but is poorly understood theoretically. Here we show that the thermodynamic theory of self-assembly involves an inevitable divergence in chemical potential. The divergence and its detailed structure are controlled by the spectrum of the transfer matrix, which summarizes all of self-assembly design degrees of freedom. By analyzing the transfer matrix, we map out the phase boundary between the designable structures and the unstructured aggregates, driven by the level of cross-talk.
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