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Register a new userSoFiA: a flexible source finder for 3D spectral line data
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We introduce SoFiA, a flexible software application for the detection and parameterization of sources in 3D spectral-line datasets. SoFiA combines for the first time in a single piece of software a set of new source-finding and parameterization algorithms developed on the way to future HI surveys with ASKAP (WALLABY, DINGO) and APERTIF. It is designed to enable the general use of these new algorithms by the community on a broad range of datasets. The key advantages of SoFiA are the ability to: search for line emission on multiple scales to detect 3D sources in a complete and reliable way, taking into account noise level variations and the presence of artefacts in a data cube; estimate the reliability of individual detections; look for signal in arbitrarily large data cubes using a catalogue of 3D coordinates as a prior; provide a wide range of source parameters and output products which facilitate further analysis by the user. We highlight the modularity of SoFiA, which makes it a flexible package allowing users to select and apply only the algorithms useful for their data and science questions. This modularity makes it also possible to easily expand SoFiA in order to include additional methods as they become available. The full SoFiA distribution, including a dedicated graphical user interface, is publicly available for download.
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The SDSS-IV Mapping Nearby Galaxies at APO (MaNGA) program has been operating from 2014-2020, and has now observed a sample of 9,269 galaxies in the low redshift universe (z ~ 0.05) with integral-field spectroscopy. With rest-optical (lambdalambda 0.36 - 1.0 um) spectral resolution R ~ 2000 the instrumental spectral line-spread function (LSF) typically has 1sigma width of about 70 km/s, which poses a challenge for the study of the typically 20-30 km/s velocity dispersion of the ionized gas in present-day disk galaxies. In this contribution, we present a major revision of the MaNGA data pipeline architecture, focusing particularly on a variety of factors impacting the effective LSF (e.g., undersampling, spectral rectification, and data cube construction). Through comparison with external assessments of the MaNGA data provided by substantially higher-resolution R ~ 10,000 instruments we demonstrate that the revised MPL-10 pipeline measures the instrumental line spread function sufficiently accurately (<= 0.6% systematic, 2% random around the wavelength of Halpha) that it enables reliable measurements of astrophysical velocity dispersions sigma_Halpha ~ 20 km/s for spaxels with emission lines detected at SNR > 50. Velocity dispersions derived from [O II], Hbeta, [O III], [N II], and [S II] are consistent with those derived from Halpha to within about 2% at sigma_Halpha > 30 km/s. Although the impact of these changes to the estimated LSF will be minimal at velocity dispersions greater than about 100 km/s, scientific results from previous data releases that are based on dispersions far below the instrumental resolution should be reevaulated.
We provide a detailed description of the Herschel-SPIRE Fourier Transform Spectrometer (FTS) Spectral Feature Finder (FF). The FF is an automated process designed to extract significant spectral features from SPIRE FTS data products. Optimising the number of features found in SPIRE-FTS spectra is challenging. The wide SPIRE-FTS frequency range (447-1568 GHz) leads to many molecular species and atomic fine structure lines falling within the observed bands. As the best spectral resolution of the SPIRE-FTS is ~1.2 GHz, there can be significant line blending, depending on the source type. In order to find, both efficiently and reliably, features in spectra associated with a wide range of sources, the FF iteratively searches for peaks over a number of signal-to-noise ratio (SNR) thresholds. For each threshold, newly identified features are rigorously checked before being added to the fitting model. At the end of each iteration, the FF simultaneously fits the continuum and features found, with the resulting residual spectrum used in the next iteration. The final FF products report the frequency of the features found and the associated SNRs. Line flux determination is not included as part of the FF products, as extracting reliable line flux from SPIRE-FTS data is a complex process that requires careful evaluation and analysis of the spectra on a case-by-case basis. The FF results are 100% complete for features with SNR greater than 10 and 50-70% complete at SNR of 5. The FF code and all FF products are publicly available via the Herschel Science Archive.
An updated Science Vision for the SOFIA project is presented, including an overview of the characteristics and capabilities of the observatory and first generation instruments. A primary focus is placed on four science themes: The Formation of Stars and Planets, The Interstellar Medium of the Milky Way, Galaxies and the Galactic Center and Planetary Science.
We describe the redmonster automated redshift measurement and spectral classification software designed for the extended Baryon Oscillation Spectroscopic Survey (eBOSS) of the Sloan Digital Sky Survey IV (SDSS-IV). We describe the algorithms, the template standard and requirements, and the newly developed galaxy templates to be used on eBOSS spectra. We present results from testing on early data from eBOSS, where we have found a 90.5% automated redshift and spectral classification success rate for the luminous red galaxy sample (redshifts 0.6$lesssim z lesssim$1.0). The redmonster performance meets the eBOSS cosmology requirements for redshift classification and catastrophic failures, and represents a significant improvement over the previous pipeline. We describe the empirical processes used to determine the optimum number of additive polynomial terms in our models and an acceptable $Deltachi_r^2$ threshold for declaring statistical confidence. Statistical errors on redshift measurement due to photon shot noise are assessed, and we find typical values of a few tens of km s$^{-1}$. An investigation of redshift differences in repeat observations scaled by error estimates yields a distribution with a Gaussian mean and standard deviation of $musim$0.01 and $sigmasim$0.65, respectively, suggesting the reported statistical redshift uncertainties are over-estimated by $sim$54%. We assess the effects of object magnitude, signal-to-noise ratio, fiber number, and fiber head location on the pipelines redshift success rate. Finally, we describe directions of ongoing development.
We investigate star-galaxy classification for astronomical surveys in the context of four methods enabling the interpretation of black-box machine learning systems. The first is outputting and exploring the decision boundaries as given by decision tree based methods, which enables the visualization of the classification categories. Secondly, we investigate how the Mutual Information based Transductive Feature Selection (MINT) algorithm can be used to perform feature pre-selection. If one would like to provide only a small number of input features to a machine learning classification algorithm, feature pre-selection provides a method to determine which of the many possible input properties should be selected. Third is the use of the tree-interpreter package to enable popular decision tree based ensemble methods to be opened, visualized, and understood. This is done by additional analysis of the tree based model, determining not only which features are important to the model, but how important a feature is for a particular classification given its value. Lastly, we use decision boundaries from the model to revise an already existing method of classification, essentially asking the tree based method where decision boundaries are best placed and defining a new classification method. We showcase these techniques by applying them to the problem of star-galaxy separation using data from the Sloan Digital Sky Survey (hereafter SDSS). We use the output of MINT and the ensemble methods to demonstrate how more complex decision boundaries improve star-galaxy classification accuracy over the standard SDSS frames approach (reducing misclassifications by up to $approx33%$). We then show how tree-interpreter can be used to explore how relevant each photometric feature is when making a classification on an object by object basis.
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