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Register a new userLeoTask: a fast, flexible and reliable framework for computational research
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Added by
Changwang Zhang
Publication date
2015
fields
Informatics Engineering
and research's language is
English
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LeoTask is a Java library for computation-intensive and time-consuming research tasks. It automatically executes tasks in parallel on multiple CPU cores on a computing facility. It uses a configuration file to enable automatic exploration of parameter space and flexible aggregation of results, and therefore allows researchers to focus on programming the key logic of a computing task. It also supports reliable recovery from interruptions, dynamic and cloneable networks, and integration with the plotting software Gnuplot.
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Automated compilation error repair, the problem of suggesting fixes to buggy programs that fail to compile, has generated significant interest in recent years. Apart from being a tool of general convenience, automated code repair has significant pedagogical applications for novice programmers who find compiler error messages cryptic and unhelpful. Existing approaches largely solve this problem using a blackbox-application of a heavy-duty generative learning technique, such as sequence-to-sequence prediction (TRACER) or reinforcement learning (RLAssist). Although convenient, such black-box application of learning techniques makes existing approaches bulky in terms of training time, as well as inefficient at targeting specific error types. We present MACER, a novel technique for accelerated error repair based on a modular segregation of the repair process into repair identification and repair application. MACER uses powerful yet inexpensive discriminative learning techniques such as multi-label classifiers and rankers to first identify the type of repair required and then apply the suggested repair. Experiments indicate that the fine-grained approach adopted by MACER offers not only superior error correction, but also much faster training and prediction. On a benchmark dataset of 4K buggy programs collected from actual student submissions, MACER outperforms existing methods by 20% at suggesting fixes for popular errors that exactly match the fix desired by the student. MACER is also competitive or better than existing methods at all error types -- whether popular or rare. MACER offers a training time speedup of 2x over TRACER and 800x over RLAssist, and a test time speedup of 2-4x over both.
We study a stochastic game framework with dynamic set of players, for modeling and analyzing their computational investment strategies in distributed computing. Players obtain a certain reward for solving the problem or for providing their computational resources, while incur a certain cost based on the invested time and computational power. We first study a scenario where the reward is offered for solving the problem, such as in blockchain mining. We show that, in Markov perfect equilibrium, players with cost parameters exceeding a certain threshold, do not invest; while those with cost parameters less than this threshold, invest maximal power. Here, players need not know the system state. We then consider a scenario where the reward is offered for contributing to the computational power of a common central entity, such as in volunteer computing. Here, in Markov perfect equilibrium, only players with cost parameters in a relatively low range in a given state, invest. For the case where players are homogeneous, they invest proportionally to the reward to cost ratio. For both the scenarios, we study the effects of players arrival and departure rates on their utilities using simulations and provide additional insights.
The prevailing net-centric environment demands and enables modeling and simulation to combine efforts from numerous disciplines. Software techniques and methodology, in particular service-oriented architecture, provide such an opportunity. Service-oriented simulation has been an emerging paradigm following on from object- and process-oriented methods. However, the ad-hoc frameworks proposed so far generally focus on specific domains or systems and each has its pros and cons. They are capable of addressing different issues within service-oriented simulation from different viewpoints. It is increasingly important to describe and evaluate the progress of numerous frameworks. In this paper, we propose a novel three-dimensional reference model for a service-oriented simulation paradigm. The model can be used as a guideline or an analytic means to find the potential and possible future directions of the current simulation frameworks. In particular, the model inspects the crossover between the disciplines of modeling and simulation, service-orientation, and software/systems engineering. Based on the model, we present a comprehensive survey on several classical service-oriented simulation frameworks, including formalism-based, model-driven, interoperability protocol based, eXtensible Modeling and Simulation Framework (XMSF), and Open Grid Services Architecture (OGSA) based frameworks etc. The comparison of these frameworks is also performed. Finally the significance both in academia and practice are presented and future directions are pointed out.
When the data is distributed across multiple servers, lowering the communication cost between the servers (or workers) while solving the distributed learning problem is an important problem and is the focus of this paper. In particular, we propose a fast, and communication-efficient decentralized framework to solve the distributed machine learning (DML) problem. The proposed algorithm, Group Alternating Direction Method of Multipliers (GADMM) is based on the Alternating Direction Method of Multipliers (ADMM) framework. The key novelty in GADMM is that it solves the problem in a decentralized topology where at most half of the workers are competing for the limited communication resources at any given time. Moreover, each worker exchanges the locally trained model only with two neighboring workers, thereby training a global model with a lower amount of communication overhead in each exchange. We prove that GADMM converges to the optimal solution for convex loss functions, and numerically show that it converges faster and more communication-efficient than the state-of-the-art communication-efficient algorithms such as the Lazily Aggregated Gradient (LAG) and dual averaging, in linear and logistic regression tasks on synthetic and real datasets. Furthermore, we propose Dynamic GADMM (D-GADMM), a variant of GADMM, and prove its convergence under the time-varying network topology of the workers.
This document captures the discussion and deliberation of the FAIR for Research Software (FAIR4RS) subgroup that took a fresh look at the applicability of the FAIR Guiding Principles for scientific data management and stewardship for research software. We discuss the vision of research software as ideally reproducible, open, usable, recognized, sustained and robust, and then review both the characteristic and practiced differences of research software and data. This vision and understanding of initial conditions serves as a backdrop for an attempt at translating and interpreting the guiding principles to more fully align with research software. We have found that many of the principles remained relatively intact as written, as long as considerable interpretation was provided. This was particularly the case for the Findable and Accessible foundational principles. We found that Interoperability and Reusability are particularly prone to a broad and sometimes opposing set of interpretations as written. We propose two new principles modeled on existing ones, and provide modified guiding text for these principles to help clarify our final interpretation. A series of gaps in translation were captured during this process, and these remain to be addressed. We finish with a consideration of where these translated principles fall short of the vision laid out in the opening.
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