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Register a new userLearning Deep Temporal Representations for Brain Decoding
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Added by
Orhan Firat
Publication date
2014
fields
Informatics Engineering
and research's language is
English
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Functional magnetic resonance imaging produces high dimensional data, with a less then ideal number of labelled samples for brain decoding tasks (predicting brain states). In this study, we propose a new deep temporal convolutional neural network architecture with spatial pooling for brain decoding which aims to reduce dimensionality of feature space along with improved classification performance. Temporal representations (filters) for each layer of the convolutional model are learned by leveraging unlabelled fMRI data in an unsupervised fashion with regularized autoencoders. Learned temporal representations in multiple levels capture the regularities in the temporal domain and are observed to be a rich bank of activation patterns which also exhibit similarities to the actual hemodynamic responses. Further, spatial pooling layers in the convolutional architecture reduce the dimensionality without losing excessive information. By employing the proposed temporal convolutional architecture with spatial pooling, raw input fMRI data is mapped to a non-linear, highly-expressive and low-dimensional feature space where the final classification is conducted. In addition, we propose a simple heuristic approach for hyper-parameter tuning when no validation data is available. Proposed method is tested on a ten class recognition memory experiment with nine subjects. The results support the efficiency and potential of the proposed model, compared to the baseline multi-voxel pattern analysis techniques.
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Knowledge Transfer (KT) techniques tackle the problem of transferring the knowledge from a large and complex neural network into a smaller and faster one. However, existing KT methods are tailored towards classification tasks and they cannot be used efficiently for other representation learning tasks. In this paper a novel knowledge transfer technique, that is capable of training a student model that maintains the same amount of mutual information between the learned representation and a set of (possible unknown) labels as the teacher model, is proposed. Apart from outperforming existing KT techniques, the proposed method allows for overcoming several limitations of existing methods providing new insight into KT as well as novel KT applications, ranging from knowledge transfer from handcrafted feature extractors to {cross-modal} KT from the textual modality into the representation extracted from the visual modality of the data.
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Brain imaging data are important in brain sciences yet expensive to obtain, with big volume (i.e., large p) but small sample size (i.e., small n). To tackle this problem, transfer learning is a promising direction that leverages source data to improve performance on related, target data. Most transfer learning methods focus on minimizing data distribution mismatch. However, a big challenge in brain imaging is the large domain discrepancies in cognitive experiment designs and subject-specific structures and functions. A recent transfer learning approach minimizes domain dependence to learn common features across domains, via the Hilbert-Schmidt Independence Criterion (HSIC). Inspired by this method, we propose a new Domain Independent Support Vector Machine (DI-SVM) for transfer learning in brain condition decoding. Specifically, DI-SVM simultaneously minimizes the SVM empirical risk and the dependence on domain information via a simplified HSIC. We use public data to construct 13 transfer learning tasks in brain decoding, including three interesting multi-source transfer tasks. Experiments show that DI-SVMs superior performance over eight competing methods on these tasks, particularly an improvement of more than 24% on multi-source transfer tasks.
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This work investigates the use of mixed-norm regularization for sensor selection in Event-Related Potential (ERP) based Brain-Computer Interfaces (BCI). The classification problem is cast as a discriminative optimization framework where sensor selection is induced through the use of mixed-norms. This framework is extended to the multi-task learning situation where several similar classification tasks related to different subjects are learned simultaneously. In this case, multi-task learning helps in leveraging data scarcity issue yielding to more robust classifiers. For this purpose, we have introduced a regularizer that induces both sensor selection and classifier similarities. The different regularization approaches are compared on three ERP datasets showing the interest of mixed-norm regularization in terms of sensor selection. The multi-task approaches are evaluated when a small number of learning examples are available yielding to significant performance improvements especially for subjects performing poorly.
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