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Register a new userRH 1.5D: a massively parallel code for multi-level radiative transfer with partial frequency redistribution and Zeeman polarisation
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The emergence of three-dimensional magneto-hydrodynamic (MHD) simulations of stellar atmospheres has sparked a need for efficient radiative transfer codes to calculate detailed synthetic spectra. We present RH 1.5D, a massively parallel code based on the RH code and capable of performing Zeeman polarised multi-level non-local thermodynamical equilibrium (NLTE) calculations with partial frequency redistribution for an arbitrary amount of chemical species. The code calculates spectra from 3D, 2D or 1D atmospheric models on a column-by-column basis (or 1.5D). While the 1.5D approximation breaks down in the cores of very strong lines in an inhomogeneous environment, it is nevertheless suitable for a large range of scenarios and allows for faster convergence with finer control over the iteration of each simulation column. The code scales well to at least tens of thousands of CPU cores, and is publicly available. In the present work we briefly describe its inner workings, strategies for convergence optimisation, its parallelism, and some possible applications.
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Resonance spectral lines such as H I Ly {alpha}, Mg II h&k, and Ca II H&K that form in the solar chromosphere are influenced by the effects of 3D radiative transfer as well as partial redistribution (PRD). So far no one has modeled these lines including both effects simultaneously owing to the high computing demands of existing algorithms. Such modeling is however indispensable for accurate diagnostics of the chromosphere. We present a computationally tractable method to treat PRD scattering in 3D model atmospheres using a 3D non-LTE radiative transfer code. To make the method memory-friendly, we use the hybrid approximation of Leenaarts et al. (2012) for the redistribution integral. To make it fast, we use linear interpolation on equidistant frequency grids. We verify our algorithm against computations with the RH code and analyze it for stability, convergence, and usefulness of acceleration using model atoms of Mg II with the h&k lines and H I with the Ly {alpha} line treated in PRD. A typical 3D PRD solution can be obtained in a model atmosphere with $252 times 252 times 496$ coordinate points in 50 000--200 000 CPU hours, which is a factor ten slower than computations assuming complete redistribution. We illustrate the importance of the joint action of PRD and 3D effects for the Mg II h&k lines for disk-center intensities as well as the center-to-limb variation. The proposed method allows simulating PRD lines in time series of radiation-MHD models in order to interpret observations of chromospheric lines at high spatial resolution.
We provide a detailed description of the Chimera code, a code developed to model core collapse supernovae in multiple spatial dimensions. The core collapse supernova explosion mechanism remains the subject of intense research. Progress to date demonstrates that it involves a complex interplay of neutrino production, transport, and interaction in the stellar core, three-dimensional stellar core fluid dynamics and its associated instabilities, nuclear burning, and the foundational physics of the neutrino-stellar core weak interactions and the equations of state of all stellar core constituents -particularly, the nuclear equation of state associated with nucleons, both free and bound in nuclei. Chimera, by incorporating detailed neutrino transport, realistic neutrino-matter interactions, three-dimensional hydrodynamics, realistic nuclear, leptonic, and photonic equations of state, and a nuclear reaction network, along with other refinements, can be used to study the role of neutrino radiation, hydrodynamic instabilities, and a variety of input physics in the explosion mechanism itself. It can also be used to compute observables such as neutrino signatures, gravitational radiation, and the products of nucleosynthesis associated with core collapse supernovae. The code contains modules for neutrino transport, multidimensional compressible hydrodynamics, nuclear reactions, a variety of neutrino interactions, equations of state, and modules to provide data for post-processing observables such as the products of nucleosynthesis, and gravitational radiation. Chimera is an evolving code, being updated periodically with improved input physics and numerical refinements. We detail here the current version of the code, from which future improvements will stem, which can in turn be described as needed in future publications.
Aims. We present MCFOST-art, a new non-local thermodynamic equilibrium radiative transfer solver for multilevel atomic systems. The code is embedded in the 3D radiative transfer code MCFOST and is compatible with most of the MCFOST modules. The code is versatile and designed to model the close environment of stars in 3D. Methods. The code solves for the statistical equilibrium and radiative transfer equations using the Multilevel Accelerated Lambda Iteration (MALI) method. We tested MCFOST-art on spherically symmetric models of stellar photospheres as well as on a standard model of the solar atmosphere. We computed atomic level populations and outgoing fluxes and compared these values with the results of the TURBOspectrum and RH codes. Calculations including expansion and rotation of the atmosphere were also performed. We tested both the pure local thermodynamic equilibrium and the out-of-equilibrium problems. Results. In all cases, the results from all codes agree within a few percent at all wavelengths and reach the sub-percent level between RH and MCFOST-art. We still note a few marginal discrepancies between MCFOST-art and TURBOspectrum as a result of different treatments of background opacities at some critical wavelength ranges.
This and companion papers by Harrington et al. and Blecic et al. present the Bayesian Atmospheric Radiative Transfer ({BART}) code, an open-source, open-development package to characterize extrasolar-planet atmospheres. {BART} combines a thermochemical equilibrium abundances ({TEA}), a radiative-transfer ({transit}), and a Bayesian statistical (MC3) module to constrain atmospheric temperatures and molecular abundances for given spectroscopic observations. Here, we describe the {transit} radiative-transfer package, an efficient line-by-line radiative-transfer C code for one-dimensional atmospheres, developed by P. Rojo and further modified by the UCF exoplanet group. This code produces transmission and hemisphere-integrated emission spectra. {transit} handles line-by-line opacities from HITRAN, Partridge & Schwenke ({water}), Schwenke (TiO), and Plez (VO); and collision-induced absorption from Borysow, HITRAN, and ExoMol. {transit} emission-spectra models agree with models from C. Morley (priv. comm.) within a few percent. We applied {BART} to the {Spitzer} and {Hubble} transit observations of the Neptune-sized planet HAT-P-11b. Our results generally agree with those from previous studies, constraining the {water} abundance and finding an atmosphere enhanced in heavy elements. Different conclusions start to emerge when we make different assumptions from other studies. The {BART} source code and documentation are available at https://github.com/exosports/BART.
EMMA is a cosmological simulation code aimed at investigating the reionization epoch. It handles simultaneously collisionless and gas dynamics, as well as radiative transfer physics using a moment-based description with the M1 approximation. Field quantities are stored and computed on an adaptive 3D mesh and the spatial resolution can be dynamically modified based on physically-motivated criteria. Physical processes can be coupled at all spatial and temporal scales. We also introduce a new and optional approximation to handle radiation : the light is transported at the resolution of the non-refined grid and only once the dynamics have been fully updated, whereas thermo-chemical processes are still tracked on the refined elements. Such an approximation reduces the overheads induced by the treatment of radiation physics. A suite of standard tests are presented and passed by EMMA, providing a validation for its future use in studies of the reionization epoch. The code is parallel and is able to use graphics processing units (GPUs) to accelerate hydrodynamics and radiative transfer calculations. Depending on the optimizations and the compilers used to generate the CPU reference, global GPU acceleration factors between x3.9 and x16.9 can be obtained. Vectorization and transfer operations currently prevent better GPU performances and we expect that future optimizations and hardware evolution will lead to greater accelerations.
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