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Added by
Markus Jalsenius
Publication date
2014
fields
Informatics Engineering
and research's language is
English
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We give cell-probe bounds for the computation of edit distance, Hamming distance, convolution and longest common subsequence in a stream. In this model, a fixed string of $n$ symbols is given and one $delta$-bit symbol arrives at a time in a stream. After each symbol arrives, the distance between the fixed string and a suffix of most recent symbols of the stream is reported. The cell-probe model is perhaps the strongest model of computation for showing data structure lower bounds, subsuming in particular the popular word-RAM model. * We first give an $Omega((delta log n)/(w+loglog n))$ lower bound for the time to give each output for both online Hamming distance and convolution, where $w$ is the word size. This bound relies on a new encoding scheme and for the first time holds even when $w$ is as small as a single bit. * We then consider the online edit distance and longest common subsequence problems in the bit-probe model ($w=1$) with a constant sized input alphabet. We give a lower bound of $Omega(sqrt{log n}/(loglog n)^{3/2})$ which applies for both problems. This second set of results relies both on our new encoding scheme as well as a carefully constructed hard distribution. * Finally, for the online edit distance problem we show that there is an $O((log n)^2/w)$ upper bound in the cell-probe model. This bound gives a contrast to our new lower bound and also establishes an exponential gap between the known cell-probe and RAM model complexities.
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We show tight bounds for online Hamming distance computation in the cell-probe model with word size w. The task is to output the Hamming distance between a fixed string of length n and the last n symbols of a stream. We give a lower bound of Omega((d/w)*log n) time on average per output, where d is the number of bits needed to represent an input symbol. We argue that this bound is tight within the model. The lower bound holds under randomisation and amortisation.
In this paper, we study edit distance (ED) and longest common subsequence (LCS) in the asymmetric streaming model, introduced by Saks and Seshadhri [SS13]. As an intermediate model between the random access model and the streaming model, this model allows one to have streaming access to one string and random access to the other string. Our first main contribution is a systematic study of space lower bounds for ED and LCS in the asymmetric streaming model. Previously, there are no explicitly stated results in this context, although some lower bounds about LCS can be inferred from the lower bounds for longest increasing subsequence (LIS) in [SW07][GG10][EJ08]. Yet these bounds only work for large alphabet size. In this paper, we develop several new techniques to handle ED in general and LCS for small alphabet size, thus establishing strong lower bounds for both problems. In particular, our lower bound for ED provides an exponential separation between edit distance and Hamming distance in the asymmetric streaming model. Our lower bounds also extend to LIS and longest non-decreasing sequence (LNS) in the standard streaming model. Together with previous results, our bounds provide an almost complete picture for these two problems. As our second main contribution, we give improved algorithms for ED and LCS in the asymmetric streaming model. For ED, we improve the space complexity of the constant factor approximation algorithms in [FHRS20][CJLZ20] from $tilde{O}(frac{n^delta}{delta})$ to $O(frac{d^delta}{delta};mathsf{polylog}(n))$, where $n$ is the length of each string and $d$ is the edit distance between the two strings. For LCS, we give the first $1/2+epsilon$ approximation algorithm with space $n^{delta}$ for any constant $delta>0$, over a binary alphabet.
We consider the approximate pattern matching problem under edit distance. In this problem we are given a pattern $P$ of length $w$ and a text $T$ of length $n$ over some alphabet $Sigma$, and a positive integer $k$. The goal is to find all the positions $j$ in $T$ such that there is a substring of $T$ ending at $j$ which has edit distance at most $k$ from the pattern $P$. Recall, the edit distance between two strings is the minimum number of character insertions, deletions, and substitutions required to transform one string into the other. For a position $t$ in ${1,...,n}$, let $k_t$ be the smallest edit distance between $P$ and any substring of $T$ ending at $t$. In this paper we give a constant factor approximation to the sequence $k_1,k_2,...,k_{n}$. We consider both offline and online settings. In the offline setting, where both $P$ and $T$ are available, we present an algorithm that for all $t$ in ${1,...,n}$, computes the value of $k_t$ approximately within a constant factor. The worst case running time of our algorithm is $O(n w^{3/4})$. As a consequence we break the $O(nw)$-time barrier for this problem. In the online setting, we are given $P$ and then $T$ arrives one symbol at a time. We design an algorithm that upon arrival of the $t$-th symbol of $T$ computes $k_t$ approximately within $O(1)$-multiplicative factor and $w^{8/9}$-additive error. Our algorithm takes $O(w^{1-(7/54)})$ amortized time per symbol arrival and takes $O(w^{1-(1/54)})$ additional space apart from storing the pattern $P$. Both of our algorithms are randomized and produce correct answer with high probability. To the best of our knowledge this is the first worst-case sub-linear (in the length of the pattern) time and sub-linear succinct space algorithm for online approximate pattern matching problem.
The classical analysis of online algorithms, due to its worst-case nature, can be quite pessimistic when the input instance at hand is far from worst-case. Often this is not an issue with machine learning approaches, which shine in exploiting patterns in past inputs in order to predict the future. However, such predictions, although usually accurate, can be arbitrarily poor. Inspired by a recent line of work, we augment three well-known online settings with machine learned predictions about the future, and develop algorithms that take them into account. In particular, we study the following online selection problems: (i) the classical secretary problem, (ii) online bipartite matching and (iii) the graphic matroid secretary problem. Our algorithms still come with a worst-case performance guarantee in the case that predictions are subpar while obtaining an improved competitive ratio (over the best-known classical online algorithm for each problem) when the predictions are sufficiently accurate. For each algorithm, we establish a trade-off between the competitive ratios obtained in the two respective cases.
Approximating the length of the longest increasing sequence (LIS) of an array is a well-studied problem. We study this problem in the data stream model, where the algorithm is allowed to make a single left-to-right pass through the array and the key resource to be minimized is the amount of additional memory used. We present an algorithm which, for any $delta > 0$, given streaming access to an array of length $n$ provides a $(1+delta)$-multiplicative approximation to the emph{distance to monotonicity} ($n$ minus the length of the LIS), and uses only $O((log^2 n)/delta)$ space. The previous best known approximation using polylogarithmic space was a multiplicative 2-factor. Our algorithm can be used to estimate the length of the LIS to within an additive $delta n$ for any $delta >0$ while previous algorithms could only achieve additive error $n(1/2-o(1))$. Our algorithm is very simple, being just 3 lines of pseudocode, and has a small update time. It is essentially a polylogarithmic space approximate implementation of a classic dynamic program that computes the LIS. We also give a streaming algorithm for approximating $LCS(x,y)$, the length of the longest common subsequence between strings $x$ and $y$, each of length $n$. Our algorithm works in the asymmetric setting (inspired by cite{AKO10}), in which we have random access to $y$ and streaming access to $x$, and runs in small space provided that no single symbol appears very often in $y$. More precisely, it gives an additive-$delta n$ approximation to $LCS(x,y)$ (and hence also to $E(x,y) = n-LCS(x,y)$, the edit distance between $x$ and $y$ when insertions and deletions, but not substitutions, are allowed), with space complexity $O(k(log^2 n)/delta)$, where $k$ is the maximum number of times any one symbol appears in $y$.
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