A search for CP violation in Cabibbo-suppressed $D^{pm}rightarrow K^0_{mathrm{S}} K^{pm}$ and $D^{pm}_{s}rightarrow K^0_{mathrm{S}} pi^{pm}$ decays is performed using $pp$ collision data, corresponding to an integrated luminosity of 3~fb$^{-1}$, recorded by the LHCb experiment. The individual $CP$-violating asymmetries are measured to be begin{eqnarray*} mathcal{A}_{CP}^{D^{pm}rightarrow K^0_{mathrm{S}} K^{pm}} & = & (+0.03 pm 0.17 pm 0.14) % mathcal{A}_{CP}^{D^{pm}_{s}rightarrow K^0_{mathrm{S}} pi^{pm}} & = & (+0.38 pm 0.46 pm 0.17) %, end{eqnarray*} assuming that $CP$ violation in the Cabibbo-favoured decays is negligible. A combination of the measured asymmetries for the four decay modes $D^{pm}_{(s)}rightarrow K^0_{mathrm{S}} K^{pm}$ and $D^{pm}_{(s)}rightarrow K^0_{mathrm{S}} pi^{pm}$ gives the sum [ mathcal{A}_{CP}^{D^{pm}rightarrow K^0_{mathrm{S}} K^{pm}} + mathcal{A}_{CP}^{D^{pm}_{s}rightarrow K^0_{mathrm{S}} pi^{pm}} = (+0.41 pm 0.49 pm 0.26) %. ] In all cases, the first uncertainties are statistical and the second systematic. The results represent the most precise measurements of these asymmetries to date and show no evidence for CP violation.