No Arabic abstract
We propose a novel information-theoretic approach for Bayesian optimization called Predictive Entropy Search (PES). At each iteration, PES selects the next evaluation point that maximizes the expected information gained with respect to the global maximum. PES codifies this intractable acquisition function in terms of the expected reduction in the differential entropy of the predictive distribution. This reformulation allows PES to obtain approximations that are both more accurate and efficient than other alternatives such as Entropy Search (ES). Furthermore, PES can easily perform a fully Bayesian treatment of the model hyperparameters while ES cannot. We evaluate PES in both synthetic and real-world applications, including optimization problems in machine learning, finance, biotechnology, and robotics. We show that the increased accuracy of PES leads to significant gains in optimization performance.
With increasingly more hyperparameters involved in their training, machine learning systems demand a better understanding of hyperparameter tuning automation. This has raised interest in studies of provably black-box optimization, which is made more practical by better exploration mechanism implemented in algorithm design, managing the flux of both optimization and statistical errors. Prior efforts focus on delineating optimization errors, but this is deficient: black-box optimization algorithms can be inefficient without considering heterogeneity among reward samples. In this paper, we make the key delineation on the role of statistical uncertainty in black-box optimization, guiding a more efficient algorithm design. We introduce textit{optimum-statistical collaboration}, a framework of managing the interaction between optimization error flux and statistical error flux evolving in the optimization process. Inspired by this framework, we propose the texttt{VHCT} algorithms for objective functions with only local-smoothness assumptions. In theory, we prove our algorithm enjoys rate-optimal regret bounds; in experiments, we show the algorithm outperforms prior efforts in extensive settings.
We develop parallel predictive entropy search (PPES), a novel algorithm for Bayesian optimization of expensive black-box objective functions. At each iteration, PPES aims to select a batch of points which will maximize the information gain about the global maximizer of the objective. Well known strategies exist for suggesting a single evaluation point based on previous observations, while far fewer are known for selecting batches of points to evaluate in parallel. The few batch selection schemes that have been studied all resort to greedy methods to compute an optimal batch. To the best of our knowledge, PPES is the first non-greedy batch Bayesian optimization strategy. We demonstrate the benefit of this approach in optimization performance on both synthetic and real world applications, including problems in machine learning, rocket science and robotics.
We present mlrMBO, a flexible and comprehensive R toolbox for model-based optimization (MBO), also known as Bayesian optimization, which addresses the problem of expensive black-box optimization by approximating the given objective function through a surrogate regression model. It is designed for both single- and multi-objective optimization with mixed continuous, categorical and conditional parameters. Additional features include multi-point batch proposal, parallelization, visualization, logging and error-handling. mlrMBO is implemented in a modular fashion, such that single components can be easily replaced or adapted by the user for specific use cases, e.g., any regression learner from the mlr toolbox for machine learning can be used, and infill criteria and infill optimizers are easily exchangeable. We empirically demonstrate that mlrMBO provides state-of-the-art performance by comparing it on different benchmark scenarios against a wide range of other optimizers, including DiceOptim, rBayesianOptimization, SPOT, SMAC, Spearmint, and Hyperopt.
We report a neural architecture search framework, BioNAS, that is tailored for biomedical researchers to easily build, evaluate, and uncover novel knowledge from interpretable deep learning models. The introduction of knowledge dissimilarity functions in BioNAS enables the joint optimization of predictive power and biological knowledge through searching architectures in a model space. By optimizing the consistency with existing knowledge, we demonstrate that BioNAS optimal models reveal novel knowledge in both simulated data and in real data of functional genomics. BioNAS provides a useful tool for domain experts to inject their prior belief into automated machine learning and therefore making deep learning easily accessible to practitioners. BioNAS is available at https://github.com/zj-zhang/BioNAS-pub.
In this paper, the problem of safe global maximization (it should not be confused with robust optimization) of expensive noisy black-box functions satisfying the Lipschitz condition is considered. The notion safe means that the objective function $f(x)$ during optimization should not violate a safety threshold, for instance, a certain a priori given value $h$ in a maximization problem. Thus, any new function evaluation (possibly corrupted by noise) must be performed at safe points only, namely, at points $y$ for which it is known that the objective function $f(y) > h$. The main difficulty here consists in the fact that the used optimization algorithm should ensure that the safety constraint will be satisfied at a point $y$ before evaluation of $f(y)$ will be executed. Thus, it is required both to determine the safe region $Omega$ within the search domain~$D$ and to find the global maximum within $Omega$. An additional difficulty consists in the fact that these problems should be solved in the presence of the noise. This paper starts with a theoretical study of the problem and it is shown that even though the objective function $f(x)$ satisfies the Lipschitz condition, traditional Lipschitz minorants and majorants cannot be used due to the presence of the noise. Then, a $delta$-Lipschitz framework and two algorithms using it are proposed to solve the safe global maximization problem. The first method determines the safe area within the search domain and the second one executes the global maximization over the found safe region. For both methods a number of theoretical results related to their functioning and convergence is established. Finally, numerical experiments confirming the reliability of the proposed procedures are performed.