No Arabic abstract
Cryo-electron microscopy (cryo-EM) is an emerging experimental method to characterize the structure of large biomolecular assemblies. Single particle cryo-EM records 2D images (so-called micrographs) of projections of the three-dimensional particle, which need to be processed to obtain the three-dimensional reconstruction. A crucial step in the reconstruction process is particle picking which involves detection of particles in noisy 2D micrographs with low signal-to-noise ratios of typically 1:10 or even lower. Typically, each picture contains a large number of particles, and particles have unknown irregular and nonconvex shapes.
Astrophysicists are interested in recovering the 3D gas emissivity of a galaxy cluster from a 2D image taken by a telescope. A blurring phenomenon and presence of point sources make this inverse problem even harder to solve. The current state-of-the-art technique is two step: first identify the location of potential point sources, then mask these locations and deproject the data. We instead model the data as a Poisson generalized linear model (involving blurring, Abel and wavelets operators) regularized by two lasso penalties to induce sparse wavelet representation and sparse point sources. The amount of sparsity is controlled by two quantile universal thresholds. As a result, our method outperforms the existing one.
We develop a distribution-free, unsupervised anomaly detection method called ECAD, which wraps around any regression algorithm and sequentially detects anomalies. Rooted in conformal prediction, ECAD does not require data exchangeability but approximately controls the Type-I error when data are normal. Computationally, it involves no data-splitting and efficiently trains ensemble predictors to increase statistical power. We demonstrate the superior performance of ECAD on detecting anomalous spatio-temporal traffic flow.
Crime prevention strategies based on early intervention depend on accurate risk assessment instruments for identifying high risk youth. It is important in this context that the instruments be convenient to administer, which means, in particular, that they must be reasonably brief; adaptive screening tests are useful for this purpose. Although item response theory (IRT) bears a long and rich history in producing reliable adaptive tests, adaptive tests constructed using classification and regression trees are becoming a popular alternative to the traditional IRT approach for item selection. On the upside, unlike IRT, tree-based questionnaires require no real-time parameter estimation during administration. On the downside, while item response theory provides robust criteria for terminating the exam, the stopping criterion for a tree-based adaptive test (the maximum tree depth) is unclear. We present a Bayesian decision theory approach for characterizing the trade-offs of administering tree-based questionnaires of different lengths. This formalism involves specifying 1) a utility function measuring the goodness of the assessment; 2) a target population over which this utility should be maximized; 3) an action space comprised of different-length assessments, populated via a tree-fitting algorithm. Using this framework, we provide uncertainty estimates for the trade-offs of shortening the exam, allowing practitioners to determine an optimal exam length in a principled way. The method is demonstrated through an application to youth delinquency risk assessment in Honduras.
We develop in this paper a novel intrinsic classification algorithm -- multi-frequency class averaging (MFCA) -- for classifying noisy projection images obtained from three-dimensional cryo-electron microscopy (cryo-EM) by the similarity among their viewing directions. This new algorithm leverages multiple irreducible representations of the unitary group to introduce additional redundancy into the representation of the optimal in-plane rotational alignment, extending and outperforming the existing class averaging algorithm that uses only a single representation. The formal algebraic model and representation theoretic patterns of the proposed MFCA algorithm extend the framework of Hadani and Singer to arbitrary irreducible representations of the unitary group. We conceptually establish the consistency and stability of MFCA by inspecting the spectral properties of a generalized local parallel transport operator through the lens of Wigner $D$-matrices. We demonstrate the efficacy of the proposed algorithm with numerical experiments.
We demonstrate that light-induced heat pulses of different duration and energy can write skyrmions in a broad range of temperatures and magnetic field in FeGe. Using a combination of camera-rate and pump-probe cryo-Lorentz Transmission Electron Microscopy, we directly resolve the spatio-temporal evolution of the magnetization ensuing optical excitation. The skyrmion lattice was found to maintain its structural properties during the laser-induced demagnetization, and its recovery to the initial state happened in the sub-{mu}s to {mu}s range, depending on the cooling rate of the system.