The observed clustering of galaxies and the cross-correlation of galaxies and mass provide important constraints on both cosmology and models of galaxy formation. Even though the dissipation and feedback processes associated with galaxy formation are thought to affect the distribution of matter, essentially all models used to predict clustering data are based on collisionless simulations. Here, we use large hydrodynamical simulations to investigate how galaxy formation affects the autocorrelation functions of galaxies and subhaloes, as well as their cross-correlation with matter. We show that the changes due to the inclusion of baryons are not limited to small scales and are even present in samples selected by subhalo mass. Samples selected by subhalo mass cluster ~10% more strongly in a baryonic run on scales r > 1Mpc/h, and this difference increases for smaller separations. While the inclusion of baryons boosts the clustering at fixed subhalo mass on all scales, the sign of the effect on the cross-correlation of subhaloes with matter can vary with radius. We show that the large-scale effects are due to the change in subhalo mass caused by the strong feedback associated with galaxy formation and may therefore not affect samples selected by number density. However, on scales r < r_vir significant differences remain after accounting for the change in subhalo mass. We conclude that predictions for galaxy-galaxy and galaxy-mass clustering from models based on collisionless simulations will have errors greater than 10% on sub-Mpc scales, unless the simulation results are modified to correctly account for the effects of baryons on the distributions of mass and satellites.
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