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In J. Shao et al., PRL 103, 108701 (2009) the authors claim that a model with majority rule coarsening exhibits in d=2 a percolation transition in the universality class of invasion percolation with trapping. In the present comment we give compelling evidence, including high statistics simulations on much larger lattices, that this is not correct. and that the model is trivially in the ordinary percolation universality class.
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We study the dynamics of a carrier, which performs a biased motion under the influence of an external field E, in an environment which is modeled by dynamic percolation and created by hard-core particles. The particles move randomly on a simple cubic lattice, constrained by hard-core exclusion, and they spontaneously annihilate and re-appear at some prescribed rates. Using decoupling of the third-order correlation functions into the product of the pairwise carrier-particle correlations we determine the density profiles of the environment particles, as seen from the stationary moving carrier, and calculate its terminal velocity, V_c, as the function of the applied field and other system parameters. We find that for sufficiently small driving forces the force exerted on the carrier by the environment particles shows a viscous-like behavior. An analog Stokes formula for such dynamic percolative environments and the corresponding friction coefficient are derived. We show that the density profile of the environment particles is strongly inhomogeneous: In front of the stationary moving carrier the density is higher than the average density, $rho_s$, and approaches the average value as an exponential function of the distance from the carrier. Past the carrier the local density is lower than $rho_s$ and the relaxation towards $rho_s$ may proceed differently depending on whether the particles number is or is not explicitly conserved.
In this paper we study the properties of the Barabasi model of queueing under the hypothesis that the number of tasks is steadily growing in time. We map this model exactly onto an Invasion Percolation dynamics on a Cayley tree. This allows to recover the correct waiting time distribution $P_W(tau)sim tau^{-3/2}$ at the stationary state (as observed in different realistic data) and also to characterize it as a sequence of causally and geometrically connected bursts of activity. We also find that the approach to stationarity is very slow.
We introduce a contrarian opinion (CO) model in which a fraction p of contrarians within a group holds a strong opinion opposite to the opinion held by the rest of the group. At the initial stage, stable clusters of two opinions, A and B exist. Then we introduce contrarians which hold a strong B opinion into the opinion A group. Through their interactions, the contrarians are able to decrease the size of the largest A opinion cluster, and even destroy it. We see this kind of method in operation, e.g when companies send free new products to potential customers in order to convince them to adopt the product and influence others. We study the CO model, using two different strategies, on both ER and scale-free networks. In strategy I, the contrarians are positioned at random. In strategy II, the contrarians are chosen to be the highest degrees nodes. We find that for both strategies the size of the largest A cluster decreases to zero as p increases as in a phase transition. At a critical threshold value p_c the system undergoes a second-order phase transition that belongs to the same universality class of mean field percolation. We find that even for an ER type model, where the degrees of the nodes are not so distinct, strategy II is significantly more effctive in reducing the size of the largest A opinion cluster and, at very small values of p, the largest A opinion cluster is destroyed.
I would like to thank Junk and Lyons (arXiv:2009.06864) for beginning a discussion about replication in high-energy physics (HEP). Junk and Lyons ultimately argue that HEP learned its lessons the hard way through past failures and that other fields could learn from our procedures. They emphasize that experimental collaborations would risk their legacies were they to make a type-1 error in a search for new physics and outline the vigilance taken to avoid one, such as data blinding and a strict $5sigma$ threshold. The discussion, however, ignores an elephant in the room: there are regularly anomalies in searches for new physics that result in substantial scientific activity but dont replicate with more data.
AtomAI is an open-source software package bridging instrument-specific Python libraries, deep learning, and simulation tools into a single ecosystem. AtomAI allows direct applications of the deep convolutional neural networks for atomic and mesoscopic image segmentation converting image and spectroscopy data into class-based local descriptors for downstream tasks such as statistical and graph analysis. For atomically-resolved imaging data, the output is types and positions of atomic species, with an option for subsequent refinement. AtomAI further allows the implementation of a broad range of image and spectrum analysis functions, including invariant variational autoencoders (VAEs). The latter consists of VAEs with rotational and (optionally) translational invariance for unsupervised and class-conditioned disentanglement of categorical and continuous data representations. In addition, AtomAI provides utilities for mapping structure-property relationships via im2spec and spec2im type of encoder-decoder models. Finally, AtomAI allows seamless connection to the first principles modeling with a Python interface, including molecular dynamics and density functional theory calculations on the inferred atomic position. While the majority of applications to date were based on atomically resolved electron microscopy, the flexibility of AtomAI allows straightforward extension towards the analysis of mesoscopic imaging data once the labels and feature identification workflows are established/available. The source code and example notebooks are available at https://github.com/pycroscopy/atomai.
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