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Register a new userBayesian computation via empirical likelihood
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Authors
K. L. Mengersen
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Approximate Bayesian computation (ABC) has become an essential tool for the analysis of complex stochastic models when the likelihood function is numerically unavailable. However, the well-established statistical method of empirical likelihood provides another route to such settings that bypasses simulations from the model and the choices of the ABC parameters (summary statistics, distance, tolerance), while being convergent in the number of observations. Furthermore, bypassing model simulations may lead to significant time savings in complex models, for instance those found in population genetics. The BCel algorithm we develop in this paper also provides an evaluation of its own performance through an associated effective sample size. The method is illustrated using several examples, including estimation of standard distributions, time series, and population genetics models.
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We explore past and recent developments in rare-event probability estimation with a particular focus on a novel Monte Carlo technique Empirical Likelihood Maximization (ELM). This is a versatile method that involves sampling from a sequence of densities using MCMC and maximizing an empirical likelihood. The quantity of interest, the probability of a given rare-event, is estimated by solving a convex optimization program related to likelihood maximization. Numerical experiments are performed using this new technique and benchmarks are given against existing robust algorithms and estimators.
Approximate Bayesian computation methods are useful for generative models with intractable likelihoods. These methods are however sensitive to the dimension of the parameter space, requiring exponentially increasing resources as this dimension grows. To tackle this difficulty, we explore a Gibbs version of the ABC approach that runs component-wise approximate Bayesian computation steps aimed at the corresponding conditional posterior distributions, and based on summary statistics of reduced dimensions. While lacking the standard justifications for the Gibbs sampler, the resulting Markov chain is shown to converge in distribution under some partial independence conditions. The associated stationary distribution can further be shown to be close to the true posterior distribution and some hierarchic
Many modern statistical applications involve inference for complicated stochastic models for which the likelihood function is difficult or even impossible to calculate, and hence conventional likelihood-based inferential echniques cannot be used. In such settings, Bayesian inference can be performed using Approximate Bayesian Computation (ABC). However, in spite of many recent developments to ABC methodology, in many applications the computational cost of ABC necessitates the choice of summary statistics and tolerances that can potentially severely bias the estimate of the posterior. We propose a new piecewise ABC approach suitable for discretely observed Markov models that involves writing the posterior density of the parameters as a product of factors, each a function of only a subset of the data, and then using ABC within each factor. The approach has the advantage of side-stepping the need to choose a summary statistic and it enables a stringent tolerance to be set, making the posterior less approximate. We investigate two methods for estimating the posterior density based on ABC samples for each of the factors: the first is to use a Gaussian approximation for each factor, and the second is to use a kernel density estimate. Both methods have their merits. The Gaussian approximation is simple, fast, and probably adequate for many applications. On the other hand, using instead a kernel density estimate has the benefit of consistently estimating the true ABC posterior as the number of ABC samples tends to infinity. We illustrate the piecewise ABC approach for three examples; in each case, the approach enables exact matching between simulations and data and offers fast and accurate inference.
This article surveys computational methods for posterior inference with intractable likelihoods, that is where the likelihood function is unavailable in closed form, or where evaluation of the likelihood is infeasible. We review recent developments in pseudo-marginal methods, approximate Bayesian computation (ABC), the exchange algorithm, thermodynamic integration, and composite likelihood, paying particular attention to advancements in scalability for large datasets. We also mention R and MATLAB source code for implementations of these algorithms, where they are available.
The celebrated Bernstein von-Mises theorem ensures that credible regions from Bayesian posterior are well-calibrated when the model is correctly-specified, in the frequentist sense that their coverage probabilities tend to the nominal values as data accrue. However, this conventional Bayesian framework is known to lack robustness when the model is misspecified or only partly specified, such as in quantile regression, risk minimization based supervised/unsupervised learning and robust estimation. To overcome this difficulty, we propose a new Bayesian inferential approach that substitutes the (misspecified or partly specified) likelihoods with proper exponentially tilted empirical likelihoods plus a regularization term. Our surrogate empirical likelihood is carefully constructed by using the first order optimality condition of the empirical risk minimization as the moment condition. We show that the Bayesian posterior obtained by combining this surrogate empirical likelihood and the prior is asymptotically close to a normal distribution centering at the empirical risk minimizer with covariance matrix taking an appropriate sandwiched form. Consequently, the resulting Bayesian credible regions are automatically calibrated to deliver valid uncertainty quantification. Computationally, the proposed method can be easily implemented by Markov Chain Monte Carlo sampling algorithms. Our numerical results show that the proposed method tends to be more accurate than existing state-of-the-art competitors.
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