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Added by
Serge Gaspers
Publication date
2011
fields
Informatics Engineering
and research's language is
English
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We initiate the study of a new parameterization of graph problems. In a multiple interval representation of a graph, each vertex is associated to at least one interval of the real line, with an edge between two vertices if and only if an interval associated to one vertex has a nonempty intersection with an interval associated to the other vertex. A graph on n vertices is a k-gap interval graph if it has a multiple interval representation with at most n+k intervals in total. In order to scale up the nice algorithmic properties of interval graphs (where k=0), we parameterize graph problems by k, and find FPT algorithms for several problems, including Feedback Vertex Set, Dominating Set, Independent Set, Clique, Clique Cover, and Multiple Interval Transversal. The Coloring problem turns out to be W[1]-hard and we design an XP algorithm for the recognition problem.
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We prove new complexity results for Feedback Vertex Set and Even Cycle Transversal on $H$-free graphs, that is, graphs that do not contain some fixed graph $H$ as an induced subgraph. In particular, we prove that both problems are polynomial-time solvable for $sP_3$-free graphs for every integer $sgeq 1$. Our results show that both problems exhibit the same behaviour on $H$-free graphs (subject to some open cases). This is in part explained by a new general algorithm we design for finding in a graph $G$ a largest induced subgraph whose blocks belong to some finite class ${cal C}$ of graphs. We also compare our results with the state-of-the-art results for the Odd Cycle Transversal problem, which is known to behave differently on $H$-free graphs.
Best match graphs (BMG) are a key intermediate in graph-based orthology detection and contain a large amount of information on the gene tree. We provide a near-cubic algorithm to determine whether a BMG is binary-explainable, i.e., whether it can be explained by a fully resolved gene tree and, if so, to construct such a tree. Moreover, we show that all such binary trees are refinements of the unique binary-resolvable tree (BRT), which in general is a substantial refinement of the also unique least resolved tree of a BMG. Finally, we show that the problem of editing an arbitrary vertex-colored graph to a binary-explainable BMG is NP-complete and provide an integer linear program formulation for this task.
A vertex subset $I$ of a graph $G$ is called a $k$-path vertex cover if every path on $k$ vertices in $G$ contains at least one vertex from $I$. The textsc{$k$-Path Vertex Cover Reconfiguration ($k$-PVCR)} problem asks if one can transform one $k$-path vertex cover into another via a sequence of $k$-path vertex covers where each intermediate member is obtained from its predecessor by applying a given reconfiguration rule exactly once. We investigate the computational complexity of textsc{$k$-PVCR} from the viewpoint of graph classes under the well-known reconfiguration rules: $mathsf{TS}$, $mathsf{TJ}$, and $mathsf{TAR}$. The problem for $k=2$, known as the textsc{Vertex Cover Reconfiguration (VCR)} problem, has been well-studied in the literature. We show that certain known hardness results for textsc{VCR} on different graph classes including planar graphs, bounded bandwidth graphs, chordal graphs, and bipartite graphs, can be extended for textsc{$k$-PVCR}. In particular, we prove a complexity dichotomy for textsc{$k$-PVCR} on general graphs: on those whose maximum degree is $3$ (and even planar), the problem is $mathtt{PSPACE}$-complete, while on those whose maximum degree is $2$ (i.e., paths and cycles), the problem can be solved in polynomial time. Additionally, we also design polynomial-time algorithms for textsc{$k$-PVCR} on trees under each of $mathsf{TJ}$ and $mathsf{TAR}$. Moreover, on paths, cycles, and trees, we describe how one can construct a reconfiguration sequence between two given $k$-path vertex covers in a yes-instance. In particular, on paths, our constructed reconfiguration sequence is shortest.
Paths $P_1,ldots,P_k$ in a graph $G=(V,E)$ are mutually induced if any two distinct $P_i$ and $P_j$ have neither common vertices nor adjacent vertices (except perhaps their end-vertices). The Induced Disjoint Paths problem is to decide if a graph $G$ with $k$ pairs of specified vertices $(s_i,t_i)$ contains $k$ mutually induced paths $P_i$ such that each $P_i$ connects $s_i$ and $t_i$. This is a classical graph problem that is NP-complete even for $k=2$. We study it for AT-free graphs. Unlike its subclasses of permutation graphs and cocomparability graphs, the class of AT-free graphs has no geometric intersection model. However, by a new, structural analysis of the behaviour of Induced Disjoint Paths for AT-free graphs, we prove that it can be solved in polynomial time for AT-free graphs even when $k$ is part of the input. This is in contrast to the situation for other well-known graph classes, such as planar graphs, claw-free graphs, or more recently, (theta,wheel)-free graphs, for which such a result only holds if $k$ is fixed. As a consequence of our main result, the problem of deciding if a given AT-free graph contains a fixed graph $H$ as an induced topological minor admits a polynomial-time algorithm. In addition, we show that such an algorithm is essentially optimal by proving that the problem is W[1]-hard with parameter $|V_H|$, even on a subclass of AT-free graph, namely cobipartite graphs. We also show that the problems $k$-in-a-Path and $k$-in-a-Tree are polynomial-time solvable on AT-free graphs even if $k$ is part of the input. These problems are to test if a graph has an induced path or induced tree, respectively, spanning $k$ given vertices.
A natural way of increasing our understanding of NP-complete graph problems is to restrict the input to a special graph class. Classes of $H$-free graphs, that is, graphs that do not contain some graph $H$ as an induced subgraph, have proven to be an ideal testbed for such a complexity study. However, if the forbidden graph $H$ contains a cycle or claw, then these problems often stay NP-complete. A recent complexity study on the $k$-Colouring problem shows that we may still obtain tractable results if we also bound the diameter of the $H$-free input graph. We continue this line of research by initiating a complexity study on the impact of bounding the diameter for a variety of classical vertex partitioning problems restricted to $H$-free graphs. We prove that bounding the diameter does not help for Independent Set, but leads to new tractable cases for problems closely related to 3-Colouring. That is, we show that Near-Bipartiteness, Independent Feedback Vertex Set, Independent Odd Cycle Transversal, Acyclic 3-Colouring and Star 3-Colouring are all polynomial-time solvable for chair-free graphs of bounded diameter. To obtain these results we exploit a new structural property of 3-colourable chair-free graphs.
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