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Register a new userUnleashing the Power of Distributed CPU/GPU Architectures: Massive Astronomical Data Analysis and Visualization case study
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Upcoming and future astronomy research facilities will systematically generate terabyte-sized data sets moving astronomy into the Petascale data era. While such facilities will provide astronomers with unprecedented levels of accuracy and coverage, the increases in dataset size and dimensionality will pose serious computational challenges for many current astronomy data analysis and visualization tools. With such data sizes, even simple data analysis tasks (e.g. calculating a histogram or computing data minimum/maximum) may not be achievable without access to a supercomputing facility. To effectively handle such dataset sizes, which exceed todays single machine memory and processing limits, we present a framework that exploits the distributed power of GPUs and many-core CPUs, with a goal of providing data analysis and visualizing tasks as a service for astronomers. By mixing shared and distributed memory architectures, our framework effectively utilizes the underlying hardware infrastructure handling both batched and real-time data analysis and visualization tasks. Offering such functionality as a service in a software as a service manner will reduce the total cost of ownership, provide an easy to use tool to the wider astronomical community, and enable a more optimized utilization of the underlying hardware infrastructure.
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We present a high-performance, graphics processing unit (GPU)-based framework for the efficient analysis and visualization of (nearly) terabyte (TB)-sized 3-dimensional images. Using a cluster of 96 GPUs, we demonstrate for a 0.5 TB image: (1) volume rendering using an arbitrary transfer function at 7--10 frames per second; (2) computation of basic global image statistics such as the mean intensity and standard deviation in 1.7 s; (3) evaluation of the image histogram in 4 s; and (4) evaluation of the global image median intensity in just 45 s. Our measured results correspond to a raw computational throughput approaching one teravoxel per second, and are 10--100 times faster than the best possible performance with traditional single-node, multi-core CPU implementations. A scalability analysis shows the framework will scale well to images sized 1 TB and beyond. Other parallel data analysis algorithms can be added to the framework with relative ease, and accordingly, we present our framework as a possible solution to the image analysis and visualization requirements of next-generation telescopes, including the forthcoming Square Kilometre Array pathfinder radiotelescopes.
We present a framework to interactively volume-render three-dimensional data cubes using distributed ray-casting and volume bricking over a cluster of workstations powered by one or more graphics processing units (GPUs) and a multi-core CPU. The main design target for this framework is to provide an in-core visualization solution able to provide three-dimensional interactive views of terabyte-sized data cubes. We tested the presented framework using a computing cluster comprising 64 nodes with a total of 128 GPUs. The framework proved to be scalable to render a 204 GB data cube with an average of 30 frames per second. Our performance analyses also compare between using NVIDIA Tesla 1060 and 2050 GPU architectures and the effect of increasing the visualization output resolution on the rendering performance. Although our initial focus, and the examples presented in this work, is volume rendering of spectral data cubes from radio astronomy, we contend that our approach has applicability to other disciplines where close to real-time volume rendering of terabyte-order 3D data sets is a requirement.
We report the outcomes of a survey that explores the current practices, needs and expectations of the astrophysics community, concerning four research aspects: open science practices, data access and management, data visualization, and data analysis. The survey, involving 329 professionals from several research institutions, pinpoints significant gaps in matters such as results reproducibility, availability of visual analytics tools and adoption of Machine Learning techniques for data analysis. This research is conducted in the context of the H2020 NEANIAS project.
Digital Elevation Models (DEMs) are important datasets for modelling the line of sight, such as radio signals, sound waves and human vision. These are commonly analyzed using rotational sweep algorithms. However, such algorithms require large numbers of memory accesses to 2D arrays which, despite being regular, result in poor data locality in memory. Here, we propose a new methodology called skewed Digital Elevation Model (sDEM), which substantially improves the locality of memory accesses and increases the inherent parallelism involved in the computation of rotational sweep-based algorithms. In particular, sDEM applies a data restructuring technique before accessing the memory and performing the computation. To demonstrate the high efficiency of sDEM, we use the problem of total viewshed computation as a case study considering different implementations for single-core, multi-core, single-GPU and multi-GPU platforms. We conducted two experiments to compare sDEM with (i) the most commonly used geographic information systems (GIS) software and (ii) the state-of-the-art algorithm. In the first experiment, sDEM is on average 8.8x faster than current GIS software despite being able to consider only few points because of their limitations. In the second experiment, sDEM is 827.3x faster than the state-of-the-art algorithm in the best case.
Traditional analysis techniques may not be sufficient for astronomers to make the best use of the data sets that current and future instruments, such as the Square Kilometre Array and its Pathfinders, will produce. By utilizing the incredible pattern-recognition ability of the human mind, scientific visualization provides an excellent opportunity for astronomers to gain valuable new insight and understanding of their data, particularly when used interactively in 3D. The goal of our work is to establish the feasibility of a real-time 3D monitoring system for data going into the Australian SKA Pathfinder archive. Based on CUDA, an increasingly popular development tool, our work utilizes the massively parallel architecture of modern graphics processing units (GPUs) to provide astronomers with an interactive 3D volume rendering for multi-spectral data sets. Unlike other approaches, we are targeting real time interactive visualization of datasets larger than GPU memory while giving special attention to data with low signal to noise ratio - two critical aspects for astronomy that are missing from most existing scientific visualization software packages. Our framework enables the astronomer to interact with the geometrical representation of the data, and to control the volume rendering process to generate a better representation of their datasets.
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