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Register a new userParallelization of Weighted Sequence Comparison by using EBWT
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Added by
Shashank Srikant
Publication date
2010
fields
Informatics Engineering
and research's language is
English
Authors
Shashank Srikant
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The Extended Burrows Wheeler transform (EBWT) helps to find the distance between two sequences. Implementation of an existing algorithm takes considerable amount of time for small size sequences. In this paper, we give a parallel implementation of this algorithm using NVIDIA Compute Unified Device Architecture (CUDA). We have obtained, on an average, a 2X improvement in the performance.
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