The topological susceptibility of the SU(3) random vortex world-surface ensemble, an effective model of infrared Yang-Mills dynamics, is investigated. The model is implemented by composing vortex world-surfaces of elementary squares on a hypercubic lattice, supplemented by an appropriate specification of vortex color structure on the world-surfaces. Topological charge is generated in this picture by writhe and self-intersection of the vortex world-surfaces. Systematic uncertainties in the evaluation of the topological charge, engendered by the hypercubic construction, are discussed. Results for the topological susceptibility are reported as a function of temperature and compared to corresponding measurements in SU(3) lattice Yang-Mills theory. In the confined phase, the topological susceptibility of the random vortex world-surface ensemble appears quantitatively consistent with Yang-Mills theory. As the temperature is raised into the deconfined regime, the topological susceptibility falls off rapidly, but significantly less so than in SU(3) lattice Yang-Mills theory. Possible causes of this deviation, ranging from artefacts of the hypercubic description to more physical sources, such as the adopted vortex dynamics, are discussed.