We present an atomic resolution scanning tunneling spectroscopy study of superconducting BaFe$_{1.8}$Co$_{0.2}$As$_2$ single crystals in magnetic fields up to $9 text{Tesla}$. At zero field, a single gap with coherence peaks at $overline{Delta}=6.25 text{meV}$ is observed in the density of states. At $9 text{T}$ and $6 text{T}$, we image a disordered vortex lattice, consistent with isotropic, single flux quantum vortices. Vortex locations are uncorrelated with strong scattering surface impurities, demonstrating bulk pinning. The vortex-induced sub-gap density of states fits an exponential decay from the vortex center, from which we extract a coherence length $xi=27.6pm 2.9 text{AA}$, corresponding to an upper critical field $H_{c2}=43 text{T}$.